Gene detail

Gene detail information of Glyur001306s00030549

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G64860.1	1.00E-172	sigma factor A
NR	XP_003539986.1	0	PREDICTED: RNA polymerase sigma factor sigA-like [Glycine max]
COG	YP_001870195.1	3.00E-45	RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC 73102]
Swissprot	tr\|O24629\|SIGA_ARATH	0	RNA polymerase sigma factor sigA (Precursor)
trEMBL	tr\|I1LP24\|I1LP24_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G01600.1}

Sequence

Transcript Sequence

>Glyur001306s00030549.1
CACTAATAAAGATAAATAAAATAATAAAAGGAGAGAAAATCTAATAATAGTAGCAGAGTTATTTCCTTTCACACCAACAGTTTTGTGAGTGTGAGCCTTTCCAGTGTGCTGCTGGAGCTCTTTCCATGACACTTTAAATTGCTAAGCTTTACGTTTTGGAGCAATTCATCATTGNGCAAATTGCAATTTTTTCAGATAGTTAGCAACGATTCGGGGGAGTTTCTGAAAGCAATACGTGGAGTTAGACACGGTTTAAGAATCATTGGTATAATAGGAAAATTTGATGGTAATTTGATTATATATAGTGGATAAAGGAAGGAAGGGATATAATGGCTACTGCTGCAGTTATTGGACTCAGTGGAGGAAAGAGGCTCTTGAGTTCATCTTATCATTACTCTGATATCATAGAAAAGTTTTCTTATGGCTGTGACTTTGGATCCACACACTATCAGATTGCTCCTACAAAGTCTGTAATAATTGCCAAGAAGTCATCTTCCAACTACACCACTCCAACTTTCTCAGCATCCGACCNGCAGAATCAGTCCATCAAGGCACTTAAGGAACATGTTGATGGTGCTCCTGCTATTGCAGAAGATCCATGGTTTTGCAATTCNAGTAGTGACTTGGAGGTGGAAAGCTCTGACATGGGTTATTCTTTGGAGGCTCTTCTTTTGCTGCAGAAGTCGATGCTGGAAAAGCAGTGGAACCTTTCCTTTGAAAGGGAAGTGCTAACCGAGAACTCAAGGAGGGAGAAAAGCCATAGGAAAGTGGCGGTGACTTGNTCTGGGGTGTCTGCGAGGCAAAGAAGAATGAGTACCAAGAGGAAGATCACCGGTAAGCATGGCTCCGCGATGATGCAGCGACCTTGTGCTGCTATGCAGCTGAGGTCCACAATCAGTCCGGAATTGCTTCAAAGCCGATTGAAGGGCTATGTGAAAGGCGTGGTGAGCGATGAATTGCTCTCTCATGCTGAAGTTGTAAAGCTNTCGCAGAAAATCAAAGCTGGGCTTTCCTTAGATGAGCATAAATCCAGACTGAAGGAAAGATTAGGATGTGAACCCTCTGATGATCAAGTTGCAACTTCATTGAAGATTTCTCGAGCTGAACTACGAGCGAAAATGATTGAGTGCTCTTTGGCAAGAGAAAAGCTGACTATGAGCAATGTTCGCCTGGTTATGTCTATAGCTCAAAAATATGATAACATGGGTGCTGAAATGTCTGACCTTGTTCAGGGTGGCTTGATTGGACTACTTCGTGGGATTGAGAAGTTTGATTCTTCAAAAGGGTTNAAGATTTCAACTTATGTTTATTGGTGGATACGTCAGGGTGTTTCAAGAGCTCTAGTTGAGAATTCAAGAACACTAAGATTGCCAACTCATTTGCATGAGAGATTATCTTTGATCCGCAATGCAGAGTTTAGACTGGAAGAGAGAGGCATCACTCCAACTATTGATAGGATTGCGAAATGCCTTAACATGTCTCAAAAGAAAGTCAGGAATGCTACTGAGGCAATCAGCAAAGTTTTCTCNCTAGATAGGGAAGCATTCCCCTCTCTGAATGGTCTTCCAGGAGATACTCATCATAGTTATATTGCAGATAAACGACTTGAGAACATCCCATGGAATGGAGTAGATGAGTGGGCACTAAAGGATGAAGTGAACAAACTCATTGATGTGACCCTTGTGGAACGAGAGAGAGAAATCATTCGTCTTTATTATGGACTGGATAAAGAATGTCTCACATGGGAAGACATTAGTAAACGGTAATGTCAACCATGCATTAATTTCCTTTTACATTTTTTTATCAAACTAGCAGTAAAAAAAATCTAACAAACAAATGACGGAAAATAAAAAGAGGAGCTGAGCTGACACATATTCCAATCAAGACCTACTTTACTTATATAGTAATTGATGATTGATAATTGATGATCGATGCTGTTGATGACTCATGTCGTGTAAGTGTTTCTTTATGCAGGATAGGTTTGTCAAGAGAAAGAGTAAGGCAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCTGCNAGGAAGAAAGAGATGGAGGCCATGCTATTGAAACATTGATATATATATGATGGGACTCATCATAGAGACATATTGTATATATACAACAGAACAGAAAAGGAAGTATGTACATTTGTCTTCCTGAGATTCAAAATAGATTAAAAGAGGACGATATTATTATAAGGGACTTAACATCGAAGGATATTTGTAAACTCCGTAAAAAATTGTTTGTCTGTTGGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01306	19585	24843	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006352 DNA-templated transcription, initiation

GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0016987 sigma factor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001306s00030549.1	PF04542.9	Sigma70_r2	276	343	2.10E-16
Glyur001306s00030549.1	PF04539.11	Sigma70_r3	353	423	2.50E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.369
SRR1783600	control	1.353
SRR1783602	moderate drought stress	1.565
SRR1811619	moderate drought stress	1.568

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.966
DRR006520	Root Summer glycyrrhizin high producing strain	3.973
DRR006521	Root Winter glycyrrhizin high producing strain	4.919
DRR006522	Root Winter glycyrrhizin high producing strain	4.596
DRR006523	Root Summer glycyrrhizin low producing strain	8.084
DRR006524	Root Summer glycyrrhizin low producing strain	8.198
DRR006525	Leaf Summer glycyrrhizin high producing strain	113.548
DRR006526	Leaf Summer glycyrrhizin high producing strain	113.258

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.737
SRR2868004	Drought Stress (root)	8.070
SRR2967015	Control (root)	8.693

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	102.172
SRR9715740	Leaf	154.199
SRR9715741	Leaf	106.407
SRR9715739	Root	0.182
SRR9715742	Root	1.512
SRR9715743	Root	1.414

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.755
SRR8749028	MeJA induced 9h	29.790
SRR8749029	MeJA induced 9h	37.743
SRR8749030	Uninduced	7.873
SRR8749031	Uninduced	10.121
SRR8749032	Uninduced	17.675

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.228
SRR8400027	Control - Root	5.671