Gene detail

Gene detail information of Glyur001306s00030545

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G55310.1	0	DNA topoisomerase 1 beta
NR	KHN46493.1	0	DNA topoisomerase 1 [Glycine soja]
COG	YP_006861049.1	9.00E-106	DNA topoisomerase IB [Candidatus Nitrososphaera gargensis Ga9.2]
Swissprot	tr\|P30181\|TOP1_ARATH	0	DNA topoisomerase 1
trEMBL	tr\|I1LP26\|I1LP26_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G01630.1}

Sequence

Transcript Sequence

>Glyur001306s00030545.1
ATGTGTTTTCGTATCGTATCGACGACGCAGCTACCTTCGTTCGCACTCGTTCTTTTCTCCTCCTCCTCCTCCTCCTCCATCATCTCTATCCCTATCTCAATCCCAATCCCAATCTCATCTTCTTCATCTTCATCTTCACTCAGCTCCCTCCAGCTGCGTCCTCCTTTCACATCCTTCTCGAATTGTATGTGATGTACATGCCTGGACTTTAGTGGTTGAATAATGGCTGTTGAGGCTTCTGATAAACCAAATTTGCCAAAAAAATTTGATGATGATGATGGACCNATAGTATTCAAAAGGTACTCAGCNTCTAAGAAAAATCAGTTGCATTCAGATGTAAGGAAGTCAACTTCTCACAGTCATGAGGGACAGTCATATAGACAGACTTCTGATGCGCCTTCTTCAAATGGCCAAACTTCTGGCATACAGAAAGGNAATATTGTCCCATCTTCTAAGGCATCACCCATAAAGCCTTCTGCGGGTATCTCAAAAGCATCAAATTCAGTTGTCAACACCTCCTCTAATAAGTTGCCTGTAGCAAATTCAAAATCACCTCNATTAGGGGATAAACCAAAGCCTCTNCCAGAACAGAAAATGTCCATTAATATTAAGGAGGAAACAAATTCTATCAATCACTCTGCTAAAGGTTATTGTGAAGATTCAGAGGATGACGATGATGATAAACCNTTGAGTGCTAGATTGAATATGAAATCTAACAATGGTAACAAAGCAGCACCTGTTGNTGTCAAGAAATCTTCCGAAGACTCTGATGATGATGATGATATCCCTTTGGCAGCAAAGTTATCACGGAATTCTAATTTTGGAACATCTAGCAGTAAATATNATGACTCTGATAAGAAGCCTATTTCAAAAATTCAGAAAGAGCGGCAAANTGGTTCCGGCACAAGTAATATACAGGAAAGACCATCTACACTACCAGTTAAGAGACCACTAGATAATAATAATTCCTTGAACTCTTCGGTTAAGAAGCCAAAGGTCTCAGATTCAGCTGCATCAATCAAAACTAAGCAAGTCTCTGGGAAATGTGAGCCAAAGGTGGAGGAGGAAGATGATGATGACATTCCTATTTCCCAGAGATTGAAGAAGTCACCTGCATCAGCTGATAAACCATCTTCCACAAAGAAGATAGTGACAAAAGTTACTAAAGTTAATAAGACTGGTTCAGCATCTTTTAAGAAGCAGGCCAAGAACAAGCCAAAAAAATCCNGCAGTAGTTCAGAATATTCCAAATCAACGAAACTCCTTCCTAGCTCTGGTGATGGGCAGAAAAAATGGACTACGTTGGTTCACAATGGTGTAATCTTTCCTCCTTCTTACCAGCCCCATGGCGTAAAGATGCTTTATAAGGGGAAGCCAGTTGATTTGACTCCTGAACAAGAGGAGGTTGCTACAATGTATGCAGTTATGCGAGATACAGATTACATGCAGAAAGATAGGTTCAAGGAAAATTTCTGGAATGACTGGCGAAAGTTGCTAGGAAGAAATCATGTAATTCAGAACTTGAAAGATTGTGACTTTACCCCAATCTATGACTGGTACCAGAGTGAAAAGGAAAAGAAGAAACAAATGACTACAGAAGAGAAGAAGACCCTGAAGGAAGAGAAATTGAAGCAAGAGGAGAAATACATGTGGGCTATTGTTGATGGTGTTAAAGAGAAGGTTGGAAATTTCAGAGTTGAACCTCCAGGATTGTTCCGNGGCCGTGGAGAGCATCCCAAGGTTATTATGATAGTTGTTANTTAACTAGATGCATGTAGANTTTGCAGCTTGGTTGTTGTTTTGTATATGGCTTCATCTTCAGAATTTTGACTGGCTTCTACAGTTCATAACATTTACTTACTGACTGCAATTTATGTTATTAGATGGGAAGATTGAAAAAACGCATTCGTCCAAGTGATATCACAATTAATATTGGAGCAGATGCACCAATTCCTGAATGTCCTATTCCTGGTGAACGGTGGAAGGAGATAAGACATGACAATACAGTTACATGGTTAGCCTTTTGGAGTGACCCGATCAATCCAAAGCTATTCAAGTACGTGTTTCTGGCAGCTAGTAGTTCCTTGAAGGGTCAAAGCGACAAGGAAAAGTATGAGAAAGCCAGGATGTTGAAGGATTATATAGAGAACATTAGGGCTGCATACACAAAAGACTTTACGAGTAAAGATATTACAAGGCAGCAAATTGCTGTTGCTACTTACCTTATCGATAAACTAGCTCTGAGGGCTGGTAATGAGAAGGATGATGATGAAGCTGATACTGTTGGTTGTTGCACATTAAAAGTAGAGAATGTGACGAGAGAAGCCCCCAACAAATTGAAGTTTAACTTCCTTGGTAAAGATTCAATCAANTATGAAAATACAGTTGAGGTTGAACTTCCTGTTTATAATGCAATTTTGAAGTTCCAAAAAGATAAACGCCCTGGTGATGATCTTTTTGACAAGTTGGATACAAGTAAATTAAATGCTCATCTGAAGGAACTCATGCCNGGCCTAACAGCAAAAGTCTTCCGTACATTCAATGCATCTATCACATTGGATGATATGTTGAATAAGGGAGTGAAAGATGGAGATGTTGGGGAAAAGATTGTTGTTTATCAGCATGCAAATAAACAGGTTGCGATCATTTGCAATCATCAACGTAGTGTTTCAAAATCTCACAGTGCACAGATGACAAAGTTAAATGAGAAGATTGATGAACTTCAGGCTGTTCTGAAGGAGCTGAAAATAGATTTGGACAGGGCAAGGAAAGGAAAGCCCCCTTCAAAGAGTTCAGATGGAAAGAGAAAAAAGAACTTATCTCCCGAAGCGCTAGAGAAAAAGATATCTCAAACCAATGCAAAAATTGAGAAAATGCAACGTGATATGAAGACAAAAGAAGATCTTAAAACTGTGGCATTAGGCACATCCAAGATAAACTACCTTGACCCCAGGATTACAGTTGCCTGGTGCAAGCGGCANGAGGTTCCTATTGAAAAGATTTTCAACAAATCTCTGCTGGCAAAGTTTTCTTGGGCAATGGATGTGGACCCCGACTTCAGATTCTGAGATCCATAAAATGGTGGCATGTTGAGATGGTGGGGGAAAACATTTCTTTTTTACTCATTTCTTTTCTATTAAAAAAAAATANTTTTTCTGTTTTGTCGAGTCTAATGGAAATTGATGTTGTAAGTTCATCTAATCTAATTAATTGGGGTTCGTTGCCCCTTCTCCATTGATCTGTTTTCTTCTTGAACATTCAACGATTCATAGTTATGATTTAATGTGATACCCATTGCCAAATGTGGAAAATGAGGTGAAGTTTTGTAGATTCGTTCCTTTTATTTTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01306	999	9915	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001306s00030545.2	PF02919.10	Topoisom_I_N	356	568	2.20E-100
Glyur001306s00030545.2	PF01028.15	Topoisom_I	570	797	3.70E-87
Glyur001306s00030545.2	PF14370.1	Topo_C_assoc	831	900	1.60E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.398
SRR1783600	control	18.298
SRR1783602	moderate drought stress	17.450
SRR1811619	moderate drought stress	16.836

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.253
DRR006520	Root Summer glycyrrhizin high producing strain	18.917
DRR006521	Root Winter glycyrrhizin high producing strain	18.338
DRR006522	Root Winter glycyrrhizin high producing strain	18.050
DRR006523	Root Summer glycyrrhizin low producing strain	24.012
DRR006524	Root Summer glycyrrhizin low producing strain	23.611
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.229
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.169

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	48.428
SRR2868004	Drought Stress (root)	54.241
SRR2967015	Control (root)	52.510

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.152
SRR9715740	Leaf	39.313
SRR9715741	Leaf	39.672
SRR9715739	Root	1.988
SRR9715742	Root	12.027
SRR9715743	Root	11.272

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	58.268
SRR8749028	MeJA induced 9h	69.640
SRR8749029	MeJA induced 9h	49.884
SRR8749030	Uninduced	43.171
SRR8749031	Uninduced	59.948
SRR8749032	Uninduced	37.684

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.542
SRR8400027	Control - Root	35.693