Gene detail

Gene detail information of Glyur001305s00042014

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G03440.1	2.00E-110	ARM repeat superfamily protein
NR	XP_003552957.1	0	PREDICTED: U-box domain-containing protein 4-like [Glycine max]
Swissprot	tr\|O22193\|PUB4_ARATH	2.00E-39	U-box domain-containing protein 4
trEMBL	tr\|I1MZD4\|I1MZD4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G04410.1}

Sequence

Transcript Sequence

>Glyur001305s00042014.1
CGCTCTCTCTTTCTCTCTCCATGTGACCTTTGTCTTATAAGTTTAGCACTAATAACTGTTGCTTAACGCTTCTCTCAAAACAAAAACCTCCCCCCACCCTACCTTTTTGCATTTGCGTTTCTCAGCCTCCTAAAATCATACACCAGATTTTTTCTCTCCCCACTCTTTCTCTCTCTAAAACTCTCTCTCACTAACCCCATCAATGGAGAGTCCCCATTCCCCTTCCTCCTGTTCCTCTTCTTCTTCGTCGTCGTCTTCGTGGGAGGGCAACGGCGCCGTCGACGCCGTCAATTGGGAGGCGGAGGAGCCGCGAACGCCGTTGGCCGTCCGGCGAGCCCTTCAGCTACTGAACTCCGGCGAGGCGGAGCTGCGTCTTCAGGCCGCTAGAGACATCCGGCGACTCACGAAGACCTCGCAGCGCTGTCGGCGCCAGCTCTCCGAAGCTGTCGGTCCACTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCACACGAACCCGCTCTCCTGGCCTTGCTCAACCTCGCCGTCAAAGATGAAAAGAATAAAATCAGTATTGTGGAGGCCGGAGCATTGGAACCGATAATTAGTTTCCTCAAGTCACAAAATCCAAATCTGCAGGAGTCTGCAACTGCATCTTTGCTCACACTATCTGCCTCTTCAACCAACAAACCAATTATCAGTGCCTGTGGAGCCATTCCTCTTCTTGTTGACATCCTCAGAGATGGAAGCCCACAAGCTAAAGCTGATGCAGTAATGGCTCTCTCTAATTTATCAACACACCCAAATAATCTCGGCATCATCCTCGAAACATGTCCAATCCCTTTCATAGTTGACATTCTCAAAACCTGCAAAAAGTCCTCAAAAACAGCTGAGAAATGCTGTGCTCTGATAGAATCCTTGGTGGATTATGATGAGGGCAGAACTGCCTTGACATCTGAGGAAGGTGGGGTTCTTGCAGTGGTGGAAGTCCTTGAGAATGGCACTCTCCAAAGCAGGGAGCATGCTGTTGGGGCACTATTGACAATGTGCCAAAGCGATCGATGTAAATACCGGGAACCGATTCTTAGAGAAGGTGTCATTCCAGGACTTCTTGAGCTCACTGTTCAGGGAACACCCAAGTCTCAGTCGAAAGCGCGCACCCTTTTGCAGTTACTAAGAGAGTCTCCTTACCCAAGATCTGAAATTCAACCTGACACTCTTGAGAATATTGTATGCAACATCATATCCCAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTCCAAGTCAGCATGGAACAAAGTCTGAGGCATTTACAGCAAAGGGCTCTTGTATGCACCCCAAGTGATCTTCCTATAGCTGGTTGTGCTTCTGAAGTTTCTTCAAAATGATAGTTGTGGTTGGCCAACTTTTCCCCTTGTCTTCTTCCCCCCTCTTTTTCTTTCCACGTGGGGCTTGTGANATAAAATTTCCATAGCAAAAAGGAGAAAAAAAAATACATAATGAAGTATGCCAGTCCAGGCCATTGTGGAGGGACCGAGTGACTGGTGATTGTCAATAAATTGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01305	60918	66216	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001305s00042014.1	PF04826.8	Arm_2	118	196	1.70E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.989
SRR1783600	control	20.986
SRR1783602	moderate drought stress	21.472
SRR1811619	moderate drought stress	21.525

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.844
DRR006520	Root Summer glycyrrhizin high producing strain	22.966
DRR006521	Root Winter glycyrrhizin high producing strain	41.673
DRR006522	Root Winter glycyrrhizin high producing strain	40.362
DRR006523	Root Summer glycyrrhizin low producing strain	10.244
DRR006524	Root Summer glycyrrhizin low producing strain	10.354
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.620
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.270

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.582
SRR2868004	Drought Stress (root)	12.705
SRR2967015	Control (root)	11.002

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.255
SRR9715740	Leaf	16.310
SRR9715741	Leaf	11.507
SRR9715739	Root	4.858
SRR9715742	Root	5.869
SRR9715743	Root	5.659

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.469
SRR8749028	MeJA induced 9h	6.726
SRR8749029	MeJA induced 9h	3.615
SRR8749030	Uninduced	8.808
SRR8749031	Uninduced	5.447
SRR8749032	Uninduced	7.222

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.576
SRR8400027	Control - Root	12.401