Gene detail information of Glyur001304s00038572.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20510.1 | 3.00E-82 | alfin-like 5 |
| NR | XP_006371893.1 | 5.32E-129 | hypothetical protein POPTR_0018s05470g [Populus trichocarpa] |
| Swissprot | tr|Q5XEM9|ALFL5_ARATH | 3.00E-114 | PHD finger protein ALFIN-LIKE 5, N-terminally processed |
| trEMBL | tr|U5FFQ7|U5FFQ7_POPTR | 2.00E-129 | Uncharacterized protein {ECO:0000313|EMBL:ERP49690.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01304 | 64797 | 69549 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Alfin-like |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001304s00038572.1 | PF12165.3 | DUF3594 | 13 | 151 | 1.10E-72 |
| Glyur001304s00038572.1 | PF00628.24 | PHD | 201 | 250 | 7.10E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.285 |
| SRR1783600 | control | 0.286 |
| SRR1783602 | moderate drought stress | 0.048 |
| SRR1811619 | moderate drought stress | 0.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.870 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.722 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.021 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.141 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.428 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.429 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.439 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.920 |
| SRR2868004 | Drought Stress (root) | 0.544 |
| SRR2967015 | Control (root) | 0.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.161 |
| SRR9715740 | Leaf | 0.184 |
| SRR9715741 | Leaf | 0.242 |
| SRR9715739 | Root | 0.512 |
| SRR9715742 | Root | 0.003 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.102 |
| SRR8749028 | MeJA induced 9h | 0.879 |
| SRR8749029 | MeJA induced 9h | 2.407 |
| SRR8749030 | Uninduced | 0.163 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.609 |
| SRR8400027 | Control - Root | 0.587 |