Gene detail information of Glyur001304s00038569 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G57070.1 | 2.00E-20 | hydroxyproline-rich glycoprotein family protein |
| NR | XP_004513458.1 | 0 | PREDICTED: deneddylase-like [Cicer arietinum] |
| trEMBL | tr|I1L1M1|I1L1M1_SOYBN | 3.00E-165 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G07710.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01304 | 24969 | 26666 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001304s00038569.1 | PF05553.6 | DUF761 | 524 | 552 | 9.10E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.492 |
| SRR1783600 | control | 14.771 |
| SRR1783602 | moderate drought stress | 9.804 |
| SRR1811619 | moderate drought stress | 9.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.675 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.482 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.179 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.090 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.636 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.587 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.799 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.302 |
| SRR2868004 | Drought Stress (root) | 5.620 |
| SRR2967015 | Control (root) | 10.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.026 |
| SRR9715740 | Leaf | 5.263 |
| SRR9715741 | Leaf | 3.862 |
| SRR9715739 | Root | 5.527 |
| SRR9715742 | Root | 5.588 |
| SRR9715743 | Root | 6.868 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.770 |
| SRR8749028 | MeJA induced 9h | 0.254 |
| SRR8749029 | MeJA induced 9h | 0.266 |
| SRR8749030 | Uninduced | 0.150 |
| SRR8749031 | Uninduced | 0.077 |
| SRR8749032 | Uninduced | 0.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.856 |
| SRR8400027 | Control - Root | 14.775 |