Gene detail

Gene detail information of Glyur001303s00026795

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17020.1	1.00E-56	senescence-related gene 1
NR	XP_007149499.1	3.72E-109	hypothetical protein PHAVU_005G075500g [Phaseolus vulgaris]
COG	YP_003209425.1	7.00E-07	hypothetical protein CTU_10620 [Cronobacter turicensis z3032]
Swissprot	tr\|Q39224\|SRG1_ARATH	2.00E-67	Protein SRG1
trEMBL	tr\|V7BWS5\|V7BWS5_PHAVU	1.00E-109	Uncharacterized protein {ECO:0000313\|EMBL:ESW21493.1}

Sequence

Transcript Sequence

>Glyur001303s00026795.1
TATTTCTCAGATACCAAAGTAATACCGTTTGTATTTTTCAAGGACTAAAGTGGTTGTTTACTCTATATTATGTATATGATCAAAATTTTGCTTGTTATATATTTTGGGATAATAAGGTAGGAAAAAAAAAAGACTCAATTGGTGTTTTAGCCAAAGGCCATGGGAGAGTTCAACAACCTNTCTGGGATATCTCTTTTGGTACCATCAGTTCAAGAGTTGGCTAAAGAAAAAATCACTTATGTCCCACCCAGATATATTCGACCTGAACATAATGAAAACTTGGTGGTCGTCTCTGAACACGAATGCATCCTTGAGATTCCAGTNATTGATATGCAACGCTTGACTTCTATAGAATTTGAGACTTCAAAATCAGAGTTGGCTAAGCTCCATCTTGCTTGCAAAGAATGGGGATTCTTCCAGCTGATAAACCATAGAATAAGCTCTTCCTTTCTGGAGAAAGTAAAGTTGGAGGTTCAAGATTTCTTTAACCTACCAATGTCAGAGAAGAAAAAGTTTTGGCAGAGTCCACAACATATGGAGGGATTTGGACAAGCATTTGTTTTAAGTGAAGACCAGAAACTTGATTGGGCTGATATGTTCTATATGACCACCCTTCCCAAACACTCTAGAATGCCCCACTTATTTCCACAGCTCCCTCTTCCTTTCAGAAACTCTGGAGTCATACTCTCAAGAAATGAAAATTCTAGCCATATTATGACCAATGGAATATACCGAAGTATTGAGCATCGAGCTACAGTGAACTCTGAAAAANAAAGGCTTTCAATTGCAACATTCTATAGCCCAAGACATGATGGTGTGGTAGGTCCTGCACCGAGCTTGATTGCTGAACAAACACAAGCACAGTTCAAGAGAGTTGGAGTNGATGAGTACTTCAAGGGCGTATTTGCTCGCAAACTTGATGGCAAGTCTTACATAGATGTCATGAGAATAAAACATCCCGATTGAAGAATGTTGTGATTATTACAAAATAAAGTATGCCCAAATTGTAAGTGGTGTGTGCACAATAAAAATGTTACAGCACATTAATCATATAGTGTGCAATAAAAATGTTACAGCACATTAATCATATAGTGTGATCGTATCGGTCAATGTTAGATTGTAACTCAAATATATAAACCACGAGGTTTGGCACAAGTGGTTAATGTGCTCCATTTAAGAGAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01303	60652	63530	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001303s00026795.1	PF14226.1	DIOX_N	53	163	4.00E-27
Glyur001303s00026795.1	PF03171.15	2OG-FeII_Oxy	183	215	6.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.118
SRR1783600	control	3.198
SRR1783602	moderate drought stress	5.035
SRR1811619	moderate drought stress	4.953

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.311
DRR006520	Root Summer glycyrrhizin high producing strain	12.374
DRR006521	Root Winter glycyrrhizin high producing strain	9.334
DRR006522	Root Winter glycyrrhizin high producing strain	8.495
DRR006523	Root Summer glycyrrhizin low producing strain	3.155
DRR006524	Root Summer glycyrrhizin low producing strain	2.772
DRR006525	Leaf Summer glycyrrhizin high producing strain	88.246
DRR006526	Leaf Summer glycyrrhizin high producing strain	90.261

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.054

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.866
SRR9715740	Leaf	0.821
SRR9715741	Leaf	1.567
SRR9715739	Root	0.675
SRR9715742	Root	1.876
SRR9715743	Root	1.633

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.249
SRR8749028	MeJA induced 9h	2.318
SRR8749029	MeJA induced 9h	1.422
SRR8749030	Uninduced	9.855
SRR8749031	Uninduced	10.174
SRR8749032	Uninduced	14.148

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.652
SRR8400027	Control - Root	5.104