Gene detail

Gene detail information of Glyur001303s00026793

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17020.1	2.00E-100	senescence-related gene 1
NR	XP_004488976.1	1.07E-178	PREDICTED: protein SRG1-like [Cicer arietinum]
COG	YP_006370287.1	3.00E-22	putative iron/ascorbate oxidoreductase [Tistrella mobilis KA081020-065]
Swissprot	tr\|Q39224\|SRG1_ARATH	2.00E-127	Protein SRG1
trEMBL	tr\|A0A072V8Z9\|A0A072V8Z9_MEDTR	5.00E-168	2OG-Fe(II) oxygenase family oxidoreductase {ECO:0000313\|EMBL:KEH38519.1}

Sequence

Transcript Sequence

>Glyur001303s00026793.1
AAGAACAACCAAACCAAGGATGGAGACACAAACCATGGAAGAGGTCAACAATCCATCTGGGAGTTCTCTTTTGGTACCATCAGTTCAAGAGTTGGCTAAGGAGAGTTCTACCGTTCCACCCAGATACATCCAGCCTCAACATGAAGACTTGGTCATCTATGAAGCTGATAGTATCCTTGAGATTCCAGTTATTGATATGCAGAGCTTGCTTTCTGTAGAATCTGGGAGTTCAGAATTGGCTAAGCTTCGCCTTGCTTGCAAAGATTGGGGATTCTTCCAGAAAGTAAAGTTGGAGATTCAGGATTTCTTCAACCTTCCAATGTCAGAGAAGAAAAAGTTTTGGCAGAGTCCACAACATATTGAGGGATTTGGACAGGCATTTGTTTTAAACACTGTAGAGCTATACTCTCAGGAACTGAAAAGGCTAGCTATGGTTATTCTTGGACATATGGCAAAAGCTCTGAAAATGGAAGAGACAGAAATGAGAGAGTTATTTGAAGATGGGATGCAGTCAATGAGGATGAACTATTACCCTCCATGTCCACAACCAGAGAAGGTTATTGGCCTCACTCCCCATTCAGATGGAACAGGACTCACCATCCTCCTACAAGTGAATGAGGTGGAAGGGCTCCAAGTGAGGAAAGATGGCATGTGGGTTCCCGTTAAACCCCTGCCTAATGCCTTCATTGTCAACATTGGGGATATCCTCGAGATTGTAACTAATGGGATATACCGAAGTATTGAGCATCGCGCAACGGTGAACTCTGAAAAAGAAAGGCTTTCAATTGCAACATTCTATACAGCAAGACATGATGGAGAGATAGGTCCTGCTGCAAGCTTGACCTCAGAACAAACACCAGCACGGTTCAAGAGAATTACACTAAAGGAATTCTTGAGGAATATGTTTGCTCACAAACTTGACGGAAAGTCTTGTGTAGATGCCATGAGAATATAGCATTACTAGTTGAAGACATTAAATAACAGAGGTTTGAGTCAATTAGAGATTCAAGTTAGTGTTAGGGGTAGTGATAGAATTAGTTCAATAAGCAATAAGGCTCTATAAATAGAACTCCAATGTTCCTCATTGGTCATTCTTGCTAAATGATCAGTTGATAATATGATTTCCTTTGAGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01303	42437	44663	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001303s00026793.1	PF14226.1	DIOX_N	55	125	5.80E-09
Glyur001303s00026793.1	PF03171.15	2OG-FeII_Oxy	164	261	1.30E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.254
SRR1783600	control	5.967
SRR1783602	moderate drought stress	7.355
SRR1811619	moderate drought stress	7.263

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.703
DRR006520	Root Summer glycyrrhizin high producing strain	5.638
DRR006521	Root Winter glycyrrhizin high producing strain	4.298
DRR006522	Root Winter glycyrrhizin high producing strain	4.668
DRR006523	Root Summer glycyrrhizin low producing strain	3.097
DRR006524	Root Summer glycyrrhizin low producing strain	2.948
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.848
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.768

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.664
SRR2868004	Drought Stress (root)	2.994
SRR2967015	Control (root)	3.400

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.943
SRR9715740	Leaf	17.645
SRR9715741	Leaf	21.097
SRR9715739	Root	2.783
SRR9715742	Root	9.688
SRR9715743	Root	7.455

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.769
SRR8749028	MeJA induced 9h	4.481
SRR8749029	MeJA induced 9h	4.623
SRR8749030	Uninduced	7.000
SRR8749031	Uninduced	4.869
SRR8749032	Uninduced	6.291

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.590
SRR8400027	Control - Root	10.787