Gene detail

Gene detail information of Glyur001303s00026789

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78560.1	9.00E-148	Sodium Bile acid symporter family
NR	XP_004488981.1	0	PREDICTED: probable sodium/metabolite cotransporter BASS1, chloroplastic-like [Cicer arietinum]
COG	YP_001820971.1	6.00E-92	bile acid:sodium symporter [Opitutus terrae PB90-1]
Swissprot	tr\|Q93YR2\|BASS1_ARATH	0	Probable sodium/metabolite cotransporter BASS1, chloroplastic (Precursor)
trEMBL	tr\|I1M2V4\|I1M2V4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G33940.1}

Sequence

Transcript Sequence

>Glyur001303s00026789.1
ATGCAGTGGGGTCCCACGAGTGTGTCAAAGCACGAAAGCCACACTTTTATTTAGATAATAAAAAGAAAAAGAAAAAAGTTGAATTCAAAGGTGTGTATTTGGATCTGTGTTGTTGGTGCGGTAGGACAACGAACAAGGAGAAAAATGCAAGCATCAATTGCATGCTCATCTTCTCTACTACGTCCAAATGGAGTCGTCAAAGTCAAAGCGCAGTCACACACCAACCCANCAATTTCTTCCAGACCTAGGAGCTCTACTCTGGATCGCTCTAAATCATGCTCTCAGCTTACACTAGCATGCAAGTTTCAACCTCCATCGCCGTTAAACCCTTCCGCATCGAGATTCCCCAGAATCTGCGGTGCCAATGTGGGTCCACTTCGGTGTGGCATTTCGTCGAACGGGTACAACGCAAATGCAGGTAGTGAGAGGAGGAGTATTCGGGAGTGGGTCGAGCTGGCCGGTGAGGCCCTATCGACGGCATTTCCATTGTGGGTTACGATTGGGTGCGTGTTGGGTTTGTTGAAACCGAGTTCCTTCAATTGGGTCACTCCCAAATTGAGCATTGTGGGCCTCACCATCATCATGCTTGGTATGGGTATGACTCTCACCCTTGATGATCTTCGTGGTGCCCTTGCTATGCCCAAGGAAGTCCTCTCTGGTTTTTTCCTTCAGTATTCGGTGATGNCATTATCTGGATTTCTTATAAGCAAACTCTTAAATCTCCCATCACATTATGCAGCTGGTTTAATATTAGTTGGGTGCTGTCCTGGTGGCACTGCTAGTAACATTGTNACATATCTTGCACGTGGAAATGTGGCGCTTTCTGTGATAATGACAGCTGCAAGCACTCTATCTGCCGTGATCATGACTCCTTTTCTGACANCCAAACTAGCTGGTAAATATGTAGCTGTCGATGCAGCTGGCTTATTGGTTTCAACATTGCAAGTTGTGCTTTTTCCTGTATTGGGTGGTGCACTTATGAATCAGTATTTCCAACCTCTTGTTAAACTTGTCTCTCCGTTGATGCCACCCCTGGCTGTAGCAACTGTGGCAATTCTATGTGGGAATGCTATTGCACAGAGTTCTTCAGCAATCCTTATGTCTGGTGGACAGGTAATACTTGCAGTCTGCCTTCTTCATGCTTCTGGATTTTTCTTTGGTTACGTACTCGCAAGGTGTCTCGGGCTAGATGTCTCATCATCGCGAACCATATCCATTGAGGTTGGCATGCAGAACTCAGTTCTTGGGGTAGTTTTGGCTGCCAAGCACTTTGGAGATCCCTTAACTACAGTGCCTTGTGCTGTTTCAAGTGTGTGTCACTCANTCTTTGGTAGTATCCTGGCAGGAATATGGAGACGCTCTATTCCTGCTGAGAGGAAGGACTGAAAGTATATAGCTGGATAAGCTTTTGTATGTAACTAGGATTGTTTCATTGTTGACTTGTAGCATTTTCTGGTTCTAGTCACCAAATGTAACTGCATCTCGGTTGTCAAGGTTCTTCGATCATATTATTTTCAAGTAACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01303	25635	29045	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001303s00026789.1	PF01758.11	SBF	141	312	1.70E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.703
SRR1783600	control	7.850
SRR1783602	moderate drought stress	5.415
SRR1811619	moderate drought stress	5.407

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.491
DRR006520	Root Summer glycyrrhizin high producing strain	6.242
DRR006521	Root Winter glycyrrhizin high producing strain	2.428
DRR006522	Root Winter glycyrrhizin high producing strain	2.437
DRR006523	Root Summer glycyrrhizin low producing strain	2.962
DRR006524	Root Summer glycyrrhizin low producing strain	2.815
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.349
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.504

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.327
SRR2868004	Drought Stress (root)	12.871
SRR2967015	Control (root)	11.935

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.709
SRR9715740	Leaf	5.696
SRR9715741	Leaf	7.301
SRR9715739	Root	7.342
SRR9715742	Root	5.885
SRR9715743	Root	6.186

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.000
SRR8749028	MeJA induced 9h	5.286
SRR8749029	MeJA induced 9h	5.696
SRR8749030	Uninduced	3.356
SRR8749031	Uninduced	10.476
SRR8749032	Uninduced	12.012

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.741
SRR8400027	Control - Root	26.042