Gene detail

Gene detail information of Glyur001303s00026783

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78580.1	6.00E-106	trehalose-6-phosphate synthase
NR	XP_003541811.1	2.81E-172	PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Glycine max]
COG	YP_006545085.1	4.00E-24	alpha,alpha-trehalose-phosphate synthase (UDP-forming) [Methanoculleus bourgensis MS2]
Swissprot	tr\|Q9SYM4\|TPS1_ARATH	6.00E-125	Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
trEMBL	tr\|I1M2V9\|I1M2V9_SOYBN	1.00E-172	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G33970.2}

Sequence

Transcript Sequence

>Glyur001303s00026783.1
GGAATAATAGAAAGACATGCAGATGCCAGATTTTGATTACAAACTGAAATATGTTATCAAGGAATAGATCTCTTGCTTGAATTTTCAAGTTAGATCCACAATACCATGGTGGTACTTATCTTTTAATATTTGCAGTGAACTAAATGATACCGTTGTTGAGGCACAGCTAAGGACAAAACAAGTTCCACCACGGCTCCCAACCAAAACTGCAATTGAACGATATCAGCAGTCAACTAATCGATTGCTTATTTTGGGATTCAATGCAACTTTAACTGAACCAGTCGAGAAAAGAGGTGATCAGTATAGAGAAATGGAACTCACAGTGCATCCAGAACTGAAACAACCTTTGACACAACTTTGCAATGACCCAAAGACCACAGTTATTGTGCTTAGTGGAAGTGGTAGAGAAGTTCTAGATGAAAACTTTAAAGAATATGACATATGGCTGGCAGCGGAGAATGGAATGTTTTTAAACCCTTCAAAGGGAGAATGGATGACAACAATGCCAGAACAACTGAATATGGAGTGGGTTGACAGCGTGAAGCATGTTTTTGAGTACTTCACCGAAAGAACACCTCGGTCACGTTTCGAAGAAAGGGAAGCTTCACTTGTATGGAATTACAGACATGCAGATGTTGAGTTTGGAAAACTTCAAGCAAGGGACATGCTTCAGCATCTCTGGACAGGTCCAATTTCTAATGCATCAGTTGAAGTTGTTCAAGGAAGCCGATCTGTTGAGGTGCGAGCTGCTGGTGTTACAAAGGGAGCAGCTATTGACCGCATCCTAGGGGAGATAGATGAAGATATATATGCATTTTTTGAGCCAGAGCTTCCTTCTGTTGGGGTGGGTCTTCAACGAAGTAAGGTAACAGATGGAGTTAAGTTTCCTGTTGAGAGGATATCATCTTTGAAGATCCCAGCTAGTAAAAATGGACCAAAGTCATCATCATCATCTCAAAATCAAAAGGGACAACGACCTCTGTCAAATTCTGACAAGAAAACAACAAATAACCATGTCTGTCGTGCACCGAGGCGACCAGCTCCTGAGAAGATATCTTGGAATGTGCTTGACCTCAAGAAGGAGAACTACTTCTCATGTGCTGTTGGGCGAACTCAAACTAATGCTCGGTATACGATTGGATCCTCTGATGACGTTGTTGCATTTCTGAAGGAACTAGCGTATGCGTCTTCCAACTCCAACTCGTATCAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01303	171	2955	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT20

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K16055	TPS	EC:2.4.1.15 3.1.3.12	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process
GO:0005992 trehalose biosynthetic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001303s00026783.1	PF02358.11	Trehalose_PPase	3	165	3.50E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.312
SRR1783600	control	8.504
SRR1783602	moderate drought stress	8.950
SRR1811619	moderate drought stress	8.753

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.801
DRR006520	Root Summer glycyrrhizin high producing strain	26.472
DRR006521	Root Winter glycyrrhizin high producing strain	4.512
DRR006522	Root Winter glycyrrhizin high producing strain	4.287
DRR006523	Root Summer glycyrrhizin low producing strain	15.169
DRR006524	Root Summer glycyrrhizin low producing strain	15.172
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.628
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.997

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.983
SRR2868004	Drought Stress (root)	15.613
SRR2967015	Control (root)	15.119

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.438
SRR9715740	Leaf	22.606
SRR9715741	Leaf	12.774
SRR9715739	Root	2.968
SRR9715742	Root	21.308
SRR9715743	Root	17.788

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.919
SRR8749028	MeJA induced 9h	0.072
SRR8749029	MeJA induced 9h	0.525
SRR8749030	Uninduced	0.067
SRR8749031	Uninduced	0.041
SRR8749032	Uninduced	0.058

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.535
SRR8400027	Control - Root	21.116