Gene detail

Gene detail information of Glyur001302s00034683

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45270.1	1.00E-154	glycoprotease 1
NR	XP_004506529.1	0	PREDICTED: probable tRNA threonylcarbamoyladenosine biosynthesis protein osgepl1-like [Cicer arietinum]
COG	YP_002298561.1	8.00E-74	putative DNA-binding/iron metalloprotein/AP endonuclease [Rhodospirillum centenum SW]
Swissprot	tr\|O22145\|OSGP2_ARATH	0	Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial {ECO:0000255\|HAMAP-Rule:MF_03179} (Precursor)
trEMBL	tr\|G7JFU1\|G7JFU1_MEDTR	0	Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial {ECO:0000256\|HAMAP-Rule:MF_03179}

Sequence

Transcript Sequence

>Glyur001302s00034683.1
GCAGTTAACACTAGAAGGATGACAATTTTTTGGGTTGGACTATGCAATTACCATGTGAAGAAATACATTTAGTAGTAAAATCTTGCGTTTCAGTGGAACAGACACTTGTTTGAGTTTCTTCTGCTTTCTTTCTCTCTGCCACAATGCTACTCTCTCTCTCAGCTCCATCAATTTCCCGCTTAAACTTCCTCCCCAAACCTTCGCTTTTCACTGCTTTCCGCAGAAACCAACTTCTTCCGCACAAATATTCTTCCCGCAACTTCGTCTCCTGCGTCCGCCACAAAACTCCGAAACGAGACGGCGACCTTGTCGTTTTGGGCATCGAAACCAGCTGTGACGACACCGCTGCTGCTGTCGTGAGAAGCGACGGTGAAATTCTGAGCCAAGTGGTGTCTTCTCAGGCAGATCTGCTTGTCAAATATGGAGGTGTTGCGCCGAAAATGGCAGAAGAAGCTCACTCGCAAGTGATAGACCAGGTACAGCATTCCTGTCCTGTTGTGCAAGNAGCCCTTGATAAAGCTTATATGACNGANAAGGATCTCACNGCAGTGGCTGTTACAATTGGTCCTGGTTTAAGTCTCTGCCTTCGTGTGGGGGTGCAGAAAGCTCGGAGAATTGCTGGGGGCTTTAACTTGCCAATTATTGGCATACATCACATGGAGGCTCATGCTCTAGTGGCTAGGTTAATTGAGAAAGATTTGCAGTTTCCATTCATGGCCCTACTTATTTCAGGGGGACACAATCTACTCATTCTTGCACGTGATCTTGGGCAATACATACAACTTGGAACAACAATAGATGATGCTATTGGTGAGGCTTATGACAAGACAGCGAAATGGCTAGGACTTGATATGAGGAGAAGTGGTGGTCCTGCTATTGAGGAGCTTGCTAGGGAGGGTAATGCTGAATCAGTCAGTTTTTCTATTCCAATGAAGCAGCACAAAGATTGCAACTTCTCCTACGCTGGTCTAAAAACCCAAGTGAGGCTGGCAATTGAGTCCAAAAAGATTGATGCCAAAATTCCTATTTCTTCTGCAAGTCATGAAGATCGATTGTCTCGGGCTGATATTGCTGCTTCTTTTCAGCGAATCGCAGTGTGTCATCTTGAGGAAAGGTGTGAACGAGCAATACAGTGGGCATTGAAGATGGAGCCTTCTATAAGACACTTGGTTGTCTCTGGTGGTGTTGCATCAAATCAATATGTTCGGGCTCGGCTTGATATGGTTGTGAAGAAGAATGGCCTGCAACTTGTATGCCCTCCTCCCCGGCTTTGTACTGACAATGAAAGCTCGGAGAATTGCTGGGGCTTTAACTTGCCAATTATTGGCATACATCACATGGAGGCTCATGCTCTAGTTGCTAGGTTAATTGAGAAAGATTTGCAGTTTCCATTCATGGCCCTACTTATTTCAGGGGGACACAATCTACTCATTCTTGCACGTGATCTTGGGCAATACATACAACTTGGAACTACAATAGATGATGCTATTGGTGAGGCTTATGACAAGACAGCAAAATGGCTTGGACTTGATATGAGGAGAAGCGGTGGTCCTGCTATGGAGGAGCTTGCTAGGGAGGGTAATGCTGAATCAGTCAGTTTTTCTGTTCCAATGAAGCAGCACAAGGATTGCAACTTCTCCTACGCTGGTTTAAAAACCCAAGTAAGGCTGGCAATTGAGTCCAAAAAGATTGATGCCAAAATTCCCATTTCTTCTGCAAGTCATGAAGATCGAATGTCACGGGCTGATATTGCTGCTTCTTTTCAGCGAATTGCAGTGTTGCATCTTGAAGAAAGGTGTGAGCGAGCAATGCAGTGGGCATTGAAGATGGAGCCTTCTATAAGACACTTGGTTGTCTCTGGTGGTGTTGCATCAAATCAATATGTTCGGGCTCGGCTTGATATGGTTGTGAAGAAGAATGGCCTGCAACTTGTATGCCCTCCTCCCCGGCTTTGTACTGACAATGGTGTAATGGTTGCTTGGACTGGTATTGAGCACTTTCGCATGGGGAGATATGACCCCCCGCCACCTGCAGAAGAACCAGAAGGCTTTGTGTATGATTTACGCCCAAGGTGGCCGCTGGGAGAAGAATATGCTGAAGGAAAAAGTGAAGCACGCTCCTTAAGAACGTAACGCATTCATCCTTCTCTAACATCTCTAATTCAAGCATCATTGCAATAGTGACATTGCATGAACTTCTATGTTGCTTCTGTCTCTTATGAAGATCTACAGGAGAAGTCTCATTTTTGGACTCATCATCACTGATGGCCTAAATGACATGTTTGGCTGAATTTTCAGCAATATGTATAAAAAATGTCCAAAGTTTGCTTCTTTTGCCGGGGAAACTGGCCATTTGCATCAAGCAGTATCACGATAAAATCCAGCAAACAATGTCACTGCAGGGAAAGACCATATGATTGTGGTTGGAAGTGATGAAACTTGATTGGTGCTGTTACCAAAATTTTACAACTTACAACAAAAAGAAGAAAATTCTTCATCTATGCCTTATTCTTTAGACAATTTGTAAATTTAATAGCACACAACGACTAGTATTTATTTATTTTTATCATAGTAGACGAACTAACCTATTTTTGTGTAAGCTCTAGATATATTGTCAAGTTTCCATGTTGCCCATTCACAACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01302	40941	62794	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

MF_01445 TIGR03723
GO:0070526 GO:0070526

molecular_function
GO:0004222 metalloendopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001302s00034683.1	PF00814.20	Peptidase_M22	77	382	4.80E-81
Glyur001302s00034683.1	PF00814.20	Peptidase_M22	387	613	8.20E-58
Glyur001302s00034683.2	PF00814.20	Peptidase_M22	77	376	2.00E-84
Glyur001302s00034683.2	PF00814.20	Peptidase_M22	381	608	2.90E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.179
SRR1783600	control	12.875
SRR1783602	moderate drought stress	20.370
SRR1811619	moderate drought stress	20.023

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.113
DRR006520	Root Summer glycyrrhizin high producing strain	8.216
DRR006521	Root Winter glycyrrhizin high producing strain	10.848
DRR006522	Root Winter glycyrrhizin high producing strain	10.893
DRR006523	Root Summer glycyrrhizin low producing strain	18.308
DRR006524	Root Summer glycyrrhizin low producing strain	19.324
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.587
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.136

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.256
SRR2868004	Drought Stress (root)	8.843
SRR2967015	Control (root)	6.246

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.630
SRR9715740	Leaf	16.051
SRR9715741	Leaf	16.660
SRR9715739	Root	3.394
SRR9715742	Root	8.101
SRR9715743	Root	7.582

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.369
SRR8749028	MeJA induced 9h	13.472
SRR8749029	MeJA induced 9h	10.625
SRR8749030	Uninduced	9.661
SRR8749031	Uninduced	11.708
SRR8749032	Uninduced	9.562

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.157
SRR8400027	Control - Root	26.114