Gene detail

Gene detail information of Glyur001300s00030276

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68810.1	2.00E-25	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NR	XP_003518258.1	1.79E-107	PREDICTED: transcription factor bHLH30-like [Glycine max]
Swissprot	tr\|Q9S7Y1\|BH030_ARATH	8.00E-31	Transcription factor bHLH30
trEMBL	tr\|I1JGZ8\|I1JGZ8_SOYBN	7.00E-108	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G37720.1}

Sequence

Transcript Sequence

>Glyur001300s00030276.1
CCCTATCCTTAAAAGTACAGTCAAATTATTTCAAAACAAAACTTTTTATGGTTATTTAACTGCAAATTAATATTTTTTTTTAGAAAACAAATGTGTGCATCAGTATAAGTATCTGTCTCTCTTTGTGGACACATGTACAGGCACAAACTTATTCCCTGGTCTCCCACAGGTCTCACTCTCAATCGTTTAACCTTCCTCCTTCCCATTCCTCCTTCCACCTCGGGCAATGTTTTGTCCCTCTCCTCTTCCTATTCTACTCATTTATTTTCAGCAGTAAAAAAGAAAAAAAAGATACTAGAATAGTATCACTCTCTCATTCTCTGCGTATTTGTAGGATCCCATTCTTTCCACAAAACTTCAAAGCTTGACCCCACTCAAAAAGCTTCAATACTCCGTACACCGTATCCATAGACCACCGTACATCGTATATACTTAACACTTACACTTATATCANTCATTTTCCATATATCACTACGTCGTTGCCGCCACTAGCCAACACCTTTTCATTTTCTCTCCTGAAAAGAAAAAGAAAACACAAGTAGAAGAAGCTAGAAGAAGGAGAAGGAGAAGAAAGATGCTTCCTTTTCGGAGATTCTATGGTTTCGAGAGCTGGCTAGATCGAGAGTCAGGGCATGTTCAGAGCTCGTTGATCAAGGCGGCAGCGGAATTGAACGGTGGAAGATCGTCGTCGAATAAGTCGGAGAGGAAATCAACGGAGGCATGCAAGAGTCACAGGGAAGCCGAGAGGAGACGCAGGCAGCGAATCAACACCCACCTCTCCACCCTACGCTCTCTCCTCCCTAACGCCGCCAAGTCAGATAAGGCGTCGTTGCTTGCGGAAGTTGTTCAGCACGTGAAACGGCTGAGGAAGGAGGCTGATGACGTGGCGTGCCGTCGTAGTAACNACGGAGACTCGTCGTCTTCCTGCAGCGGTTCGGTTGTTGCTGATGATGACACGTGGCCGTTTCCCGGGGAGTCCGACGAGGCAACGCTGAGCTACTGCGACGGCGGCGGCGAGGACGGGGAGCCACGGCGGATGAAGGCGACGGTGTGTTGTGAGGACCGGTTAGGGCTGAACCGGGACCTGAACCGGGTGATCCGGTCGGTTCGGGCAAAGGTGGTTCGAGCGGAGATGATGACGATTGGGGGAAGGACAAAGAGTGTTGTGGTGATACAGTGGCCTCAGGGTGGTGAAGAGGAGGAGGAGAAGGAGGAAGTTGGGGCGTTGGAAAGGGCTTTGAAGGCTGTGGTAGAGGATCGGGCTTTGGTGGGCTCTGGAATGGGCCGGATTGTGTTGGGCCAGAAACGGGCTCGGGATAGTTATGGTTCGTCTAGTATTACTAGTGATCAGGTTGACTGCTCCTTCTTGTNGAGGAACGAGGACTTCTGCTAACACGTATAATTAGGGTTTTCCTTTTTTTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01300	32967	34474	+

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001300s00030276.1	PF00010.21	HLH	50	97	1.60E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.973
SRR1783600	control	7.905
SRR1783602	moderate drought stress	27.768
SRR1811619	moderate drought stress	27.846

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.517
DRR006520	Root Summer glycyrrhizin high producing strain	8.983
DRR006521	Root Winter glycyrrhizin high producing strain	70.987
DRR006522	Root Winter glycyrrhizin high producing strain	69.865
DRR006523	Root Summer glycyrrhizin low producing strain	6.952
DRR006524	Root Summer glycyrrhizin low producing strain	6.723
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.195
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.194

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.107
SRR2868004	Drought Stress (root)	4.198
SRR2967015	Control (root)	4.877

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.328
SRR9715740	Leaf	0.736
SRR9715741	Leaf	0.838
SRR9715739	Root	3.190
SRR9715742	Root	18.731
SRR9715743	Root	12.720

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.289
SRR8749028	MeJA induced 9h	0.047
SRR8749029	MeJA induced 9h	0.158
SRR8749030	Uninduced	0.200
SRR8749031	Uninduced	0.107
SRR8749032	Uninduced	0.849

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.523
SRR8400027	Control - Root	3.688