Gene detail information of Glyur001299s00039017 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | ATCG00340.1 | 0 | Photosystem I, PsaA/PsaB protein |
| NR | AES69823.2 | 0 | photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula] |
| COG | NP_926385.1 | 0 | photosystem I P700 chlorophyll a apoprotein A2 [Gloeobacter violaceus PCC 7421] |
| Swissprot | tr|P58385|PSAB_LOTJA | 0 | Photosystem I P700 chlorophyll a apoprotein A2 {ECO:0000255|HAMAP-Rule:MF_00482} |
| trEMBL | tr|G7J0Z5|G7J0Z5_MEDTR | 0 | Photosystem I P700 chlorophyll A apoprotein A2 {ECO:0000313|EMBL:AES69823.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01299 | 44639 | 47746 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001299s00039017.1 | PF00223.14 | PsaA_PsaB | 55 | 86 | 1.10E-10 |
| Glyur001299s00039017.1 | PF00223.14 | PsaA_PsaB | 86 | 131 | 5.90E-19 |
| Glyur001299s00039017.1 | PF00223.14 | PsaA_PsaB | 139 | 614 | 4.30E-198 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.417 |
| SRR1783600 | control | 3.525 |
| SRR1783602 | moderate drought stress | 4.259 |
| SRR1811619 | moderate drought stress | 4.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.298 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.993 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.616 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.363 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.656 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.323 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.038 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.894 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.591 |
| SRR2868004 | Drought Stress (root) | 0.271 |
| SRR2967015 | Control (root) | 0.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.008 |
| SRR9715740 | Leaf | 50.117 |
| SRR9715741 | Leaf | 44.835 |
| SRR9715739 | Root | 8.061 |
| SRR9715742 | Root | 2.255 |
| SRR9715743 | Root | 4.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.070 |
| SRR8749028 | MeJA induced 9h | 0.876 |
| SRR8749029 | MeJA induced 9h | 1.318 |
| SRR8749030 | Uninduced | 0.669 |
| SRR8749031 | Uninduced | 1.316 |
| SRR8749032 | Uninduced | 3.786 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.067 |
| SRR8400027 | Control - Root | 0.098 |