Gene detail

Gene detail information of Glyur001299s00039013

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G05160.1	1.00E-162	AMP-dependent synthetase and ligase family protein
NR	XP_004497538.1	0	PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cicer arietinum]
COG	YP_003291469.1	4.00E-120	AMP-dependent synthetase and ligase [Rhodothermus marinus DSM 4252]
Swissprot	tr\|Q9M0X9\|4CLL7_ARATH	0	4-coumarate--CoA ligase-like 7
trEMBL	tr\|A0A072VK34\|A0A072VK34_MEDTR	0	4-coumarate:CoA ligase-like protein {ECO:0000313\|EMBL:KEH42182.1}

Sequence

Transcript Sequence

>Glyur001299s00039013.1
ATGGCGAAATCCTTCGACCCCAAAACGATGACGTATTCCTCACCCAGGCCACCCATTCAACTTCCCACCCACCCCAACCTCTCCCTCACCTCCTTCCTCTTCCACACAACCACCTCCTCCTCCGCCGCCGCCGACACCCTCGCCCTCGCCGACGCCGACTCCGGCGACTCCCTCACCTTTCGCCAACTCAAAACCCACGTCTTCGCCCTCTCTCGCTCCTTACTCCGCCTCGGAATCCGACGAGGCGACGTCGTTTTGCTACTCGCACCCAATTCCATACGCTTCCCCGTTTGCTTCCTCGCCGTAACCGCCATCGGCGCCATCGCCACCACATGTAGCCCCCTTTACACCGTCTCCGAACTCTCCGCGCAAGTCACCGACTCCAAACCCAAGCTCTTCGTAACCGTATCAGAACTCTTCCACAAAATCGAATCCCTAGCCTTGGGTTTACCCTCCATAATGCTGGACGATCCTTCGATTCGCGTAAATTCGTCTTCCAGGGTTCATTACTACGCGGATTTGATCGGGGAGTTGGAAGATTGCTCCGGCGATGTTCCGGCGAACGGCGTCGTTTCGCAGTCCGACGTGGCGGCGCTTCTGTACTCCTCGGGAACCACGGGGAGGAGCAAGGGAGTGATGCTGACTCACCGGAACTTCATGGCGGTGGCGCTGGCGGGGACGGCGGATCAGGACCGGAACGGTGAGGGGAAGAACGTGTTCCTTTGCGTGGTGCCGATGTACCACGTGATGGGGCTTTCGTTGATAACGTACGCGCAGCTTCGGAGGGGGAACACGGTGGTGGTTTCGATGGGGAGATTTGATCTGGAGAAGGCACTGGCGGCGGTTGAGAAATTCCGGGTGACGCACTTGTACGTTGTTCCGCCGGTGATGGTTGAGCTGGCCAAACGACGCCACGTGGCGACTGCATACGACTTGTCATCGCTGAAGCAGCTTGCTAGCGGTGCTGCCCCTTTGGGGAGAGATTTGATGCATGAGTGTGCTGAGATTCTGCCCCATGTTGAAATCATACAGGCGTATGGCATGACTGAAGCATGTGGAATTATTTCCGTGGAAAATCCAAAGGAAGGAACCCGCCTTTCGGGTTCAACTGGAACACTAATTCCATGTGTGGAATCCCGAATAGTTAGTTTAGAAACATCGAAGCCCCTTCCACCAAATGAATTGGGGGAAATCTTGCTACGAGGACCTACTATGATGCAAGGGTACTTTAACAATCCAGAAGCAACAAAACTGACCATTGATGATCAAGGTTGGATGCATACAGGAGATCTTGGATATTTTGATGAAGAGGGACAGTTATTTGTTGTGGATCGAATAAAAGAGCTCATCAAGTGTAGCGGGTATCAGGTGGCACCAGCTGAACTTGAAGACTTACTGGTTTCTCACCCTGAAATTTCTGATGCTGGGGTTATCCCATCCCCCGATGCTAAAGCTGGTCAAGTTCCAATAGCTTTTATTGTTCTCTCACCCAATAGCTTGATAACAGAAGAAGACATTCAAAAGTTTGTAGCAAAACAGGTTGCACCATACAAAAGGTTGCGGCGAGTGACTTTTATCGAGAAGATTCCAAAGTCAGCCACAGGAAAGATCTTAAGAAAGGATCTTATAAGTTTTGATCAACAGAAGACATCAAAGTTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01299	19301	24091	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01904	4CL	EC:6.2.1.12	Phenylalanine metabolism	map00360
			Ubiquinone and other terpenoid-quinone biosynthesis	map00130
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001299s00039013.1	PF00501.23	AMP-binding	43	452	8.00E-101
Glyur001299s00039013.1	PF13193.1	AMP-binding_C	461	536	3.80E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.446
SRR1783600	control	0.441
SRR1783602	moderate drought stress	1.164
SRR1811619	moderate drought stress	1.142

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.457
DRR006520	Root Summer glycyrrhizin high producing strain	0.440
DRR006521	Root Winter glycyrrhizin high producing strain	0.574
DRR006522	Root Winter glycyrrhizin high producing strain	0.589
DRR006523	Root Summer glycyrrhizin low producing strain	0.398
DRR006524	Root Summer glycyrrhizin low producing strain	0.396
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.892
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.806

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.324
SRR2868004	Drought Stress (root)	0.600
SRR2967015	Control (root)	0.737

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.947
SRR9715740	Leaf	6.602
SRR9715741	Leaf	23.852
SRR9715739	Root	0.569
SRR9715742	Root	0.873
SRR9715743	Root	1.202

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.806
SRR8749028	MeJA induced 9h	17.638
SRR8749029	MeJA induced 9h	15.775
SRR8749030	Uninduced	33.617
SRR8749031	Uninduced	65.113
SRR8749032	Uninduced	28.643

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.525
SRR8400027	Control - Root	2.071