Gene detail information of Glyur001296s00027387 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18280.1 | 2.00E-25 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| NR | XP_007152725.1 | 2.18E-54 | hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris] |
| Swissprot | tr|P82353|NLTP2_PRUAR | 1.00E-26 | Non-specific lipid-transfer protein 2 |
| trEMBL | tr|V7C3M6|V7C3M6_PHAVU | 8.00E-55 | Uncharacterized protein {ECO:0000313|EMBL:ESW24719.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01296 | 60790 | 61068 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001296s00027387.1 | PF14368.1 | LTP_2 | 17 | 90 | 1.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2449.116 |
| SRR1783600 | control | 2461.394 |
| SRR1783602 | moderate drought stress | 1647.045 |
| SRR1811619 | moderate drought stress | 1646.382 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 810.842 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 812.297 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.920 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.546 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 570.618 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 575.150 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 52.759 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 53.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 845.624 |
| SRR2868004 | Drought Stress (root) | 391.718 |
| SRR2967015 | Control (root) | 468.208 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 33.451 |
| SRR9715740 | Leaf | 2.838 |
| SRR9715741 | Leaf | 10.658 |
| SRR9715739 | Root | 215.181 |
| SRR9715742 | Root | 277.402 |
| SRR9715743 | Root | 246.986 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.274 |
| SRR8749028 | MeJA induced 9h | 1.760 |
| SRR8749029 | MeJA induced 9h | 2.320 |
| SRR8749030 | Uninduced | 1.884 |
| SRR8749031 | Uninduced | 1.695 |
| SRR8749032 | Uninduced | 3.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1284.498 |
| SRR8400027 | Control - Root | 1179.501 |