Gene detail

Gene detail information of Glyur001296s00027386

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G18370.1	ATP binding microtubule motor family protein
NR	XP_004512893.1	PREDICTED: kinesin-II 95 kDa subunit-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q8S950\|NACK1_TOBAC	Kinesin-like protein NACK1
trEMBL	tr\|I1KJ06\|I1KJ06_SOYBN	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur001296s00027386.1
ATGCTCTTTCGTTCATTTCACTTTCAATCACCACACAGAGAGCAATTGCTCTTCTTCTTCAAAACCCTAATTCTCAGCTTCGACGCTCTGCTTTCTGAGTTGAAGAAATCAATCAATTACTCAATTTGTTGTGATCAACCCGAGATTGATAATATGACTGTGAGAACACCTGGAACACCTGCTTCAAAGATAGATAGGACACCAGTGTCAACCCCAGGAGGGCCAAGAGCTAGGGAGGAGAAGATTGTGGTTACAGTAAGGTTAAGGCCTTTAAACAGAAGGGAGCAATTGGCTAAAGATCAGGTGGCATGGGAATGCATTGATGATTATACTATCGTGTATAAACCACCAGCACATGAACGTGCTTCTCAACCAGCATCATTCACTTTTGACAAAGTTTTTGGTCCTGCATGTATAACCGAAGCAGTATATGAAGAAGGAGTAAAGAATGTTGCATTATCTGCGCTAATGGGCATTAATGCAACTGTTTTTGCTTATGGACAAACAAGCAGTGGAAAGACATACACAATGAGAGGAATAACAGAGAAGGCTGTCAATGATATTTATAACCATATAATGAATACCCCTGAAAGAAATTTCATTGTAAAAGTATCTGGACTAGAAATATACAACGAGAATGTCAGGGACTTGTTAAATTCAGAATCTGGTCGCAGTTTGAAGCTTCTAGATGATCCTGAGAAAGGTACTGTGGTTGAGAAATTAGTGGAAGAAACAGCAAAAGACGACAGGCACTTGAGACATTTGATCTCCATTTGTGAAGCTCAAAGACAGGTGGGCGAAACTGCTCTAAATGATAACAGCTCGCGGTCTCACCAGATAATAAGACTGACAATTCAAAGTACTCTTCGTGAAAATGCAGATTGCGTGAAATCTTTTGTTGCAACCCTGAACTTTGTTGATCTGGCTGGAAGTGAGAGGGCTGCACAGACACATGCAGATGGCACCAGGCTCAAAGAAGGCTGCCATATTAACCTCAGCTTGATGACTCTTACAACTGTTATCAGGAAGCTCAGTGTTGGAAAAAGAAGTGGTCATATACCTTACAGAGATTCAAAGCTCACACGTATATTGCAACATTCCCTTGGTGGGAATGCACGCACTGCCATCATATGTACTTTGAGTCCAGCACTAAGTCATGTAGAGCAATCACGAAACACTCTCTTCTTTGCTACCCGGGCAAAGGAAGTAACAAATAATGCTCAAGTAAACATGGTTGTATCAGACAAGCAGCTTGTTAAACATTTGCAAAAGGAAGTAGCAAGGTTGGAGGCAGAGCTGCGCACTCCTGATCCATCTAAAGAAAAGGATTGGAAAATTCAACAGATGGAAATGGAAATTGAAGAACTGAAACGCCAGAGAGATCTTGCACAAACTCAAGTGGATGAGTTGCGCAAAAAGCTTCAGGAAGACCAGCAGGTCTCAACGCCACTTGAATCACCACTTTCTTCAGTCAAGAAGTGCCTATCTTTCACTGGTGCACTGTCATCACTAAAACCAGAGCTAGGTTGTGAGAGAGTAAGAAACACATCATTAAGACAGTCCATGAGGCAATCATCTACTGCTCCTTTTACCCTTATGCATGAAATTCGCAAACTCGAGCACCTCCAGGAGCAGCTGGGTGAAGAAGCTAATCGAGCTTTGGAAGTATTACAAAAGGAAGTGGCATGTCATAGACTAGGTAACCAAGATGCAGCTGAGACAATTGCAAAGCTGCAAGCAGAAATAAGGGAAATGCGTTCTGTAAAGCCAGCACCCAGGAAAGTTGAAGTTGGAAGCATGGTTTCTGTCAACAAGAGTGTCAGTGCCAATCTCAAGGAGGAAATTACCCGACTTCATTCACAAGGAAGCACCATTGCAAATCTTGAACAGCAGCTTGAAAATGTGCAAAGGTCCATAGACAAGTTGGTGATGTCTCTCCCTAACAATTTTGAACATATAACCAGTGAAGCATCCCCTAAGCATAAAAAGGAACACAAAAGGAAAAAGTTACTTCCTTTGTCTTCAAGTAACAGTGCCAATCGCCAAAACTTTATTAGATCTCCCTGCTCACCATTATCTACTACTCAGCAAGTTTTGGAATCTGATATTGAAAATAGAGCCCCTGAGAATGATGATACTGTTTCAACTGAGATTTTGCCAGAGTCTGAGAAGGAAACTCCATCAAAGAGTGAAGAAACTGGAGACGTTACATCAAAGGAAAATACTTCAGGTTACCGCCGCTCTAGTTCAGTTAACATGAAGAAAATGCAGAAAATGTTTCAGAATGCAGCAGAAGAGAATGTGAGAAGTATAAGAGCATATGTCACAGAATTGAAAGAACGTGTGGCCAAACTGCAGTACCAAAAACAGTTACTTGTTTGCCAGGTGCTTGAGCTTGAAGCAAATGAAGCTAGTGGCCACGACATAGAAAATGAAGAGTACACAGGTGAACCGGAGGAGCCTCAAGTCTCATGGCAAGTAACATTTAGAGAGCAGCGGCAGCAAATCCTTGAATTATGGGATGTATGCTATGTCTCCATCATTCACAGGACCCAGTTTTATTTGCTATTCAAGGGAGACCCAGCAGATCAAATATACATTGAAGTGGAACTAAGGCGTTTGTCATGGTTGCAACAACACCTAGCAGAACTTGGGAATGCAAGTCCAGCTCCTCATGTTGGAGATGAGCCAACTATCTCACTGTCATCAAGTATGAGAGCCTTGAAAAGAGAAAGAGAATTTCTTGCGAAGAGATTGACATCGCGTTTGACGCCAGAGGAGAGGGAGTCGTTATATATCAAATGGGATGTTCCCCTTGATGGGAAGCAGAGGAGAATGCAGTTTGTCAGTAAGCTTTGGACAGATCCTCATGATCAAAAGCATGTGCAGGAGAGTGCTGAAATTGTTGCAAAGCTTGTGGGATTCTGCACAGGAGGCAACATGTCAAAGGAGATGTTTGAGCTGAATTTTGTGCTTGAGCTTGAAGCAAATGAAGCTAGTGGCCACGACATAGAAAATGAAGAGTACACAGGTGAACCGGAGGAGCCTCAAGTCTCATGGCAAGTAACATTTAGAGAGCAGCGGCAGCAAATCCTTGAATTATGGGATGTATGCTATGTCTCCATCATTCACAGGACCCAGTTTTATTTGCTATTCAAGGGAGACCCAGCAGATCAAATATACATTGAAGTGGAACTAAGGCGTTTGTCATGGTTGCAACAACACCTAGCAGAACTTGGGAATGCAAGTCCAGCTCCTCATGTTGGAGATGAGCCAACTATCTCACTGTNATCAAGTATGAGATCCTTGAAAAGAGAAAGAGAATCTCTTGCAAAGAGATTGACATCGCGTTCAACGCCTGAGGAGAGGGAGGCATTATATATCAAATGGGATGTCCCCCTTGATGGGAAACAGAGAAGGATGCAGTTTGTGAGCAAGCTTTGGACAGATCCTCATGATCAAAAGCATGTGCAGGAGAGTGCTGAAATAGTTGCAAAGCTTGTGGGTTTCTGCACAGGAGGCAACATGTCAAAGGAGATGTTTGAGCTGAATTTTGTGCTTCCATCTGATAAGAGGCCATGGTTATTGGGCTGGAATCCTATTACAAACTTCCTCAATTTGTGA

Protein Sequence

>Glyur001296s00027386.1
MLFRSFHFQSPHREQLLFFFKTLILSFDALLSELKKSINYSICCDQPEIDNMTVRTPGTPASKIDRTPVSTPGGPRAREEKIVVTVRLRPLNRREQLAKDQVAWECIDDYTIVYKPPAHERASQPASFTFDKVFGPACITEAVYEEGVKNVALSALMGINATVFAYGQTSSGKTYTMRGITEKAVNDIYNHIMNTPERNFIVKVSGLEIYNENVRDLLNSESGRSLKLLDDPEKGTVVEKLVEETAKDDRHLRHLISICEAQRQVGETALNDNSSRSHQIIRLTIQSTLRENADCVKSFVATLNFVDLAGSERAAQTHADGTRLKEGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHVEQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPSKEKDWKIQQMEMEIEELKRQRDLAQTQVDELRKKLQEDQQVSTPLESPLSSVKKCLSFTGALSSLKPELGCERVRNTSLRQSMRQSSTAPFTLMHEIRKLEHLQEQLGEEANRALEVLQKEVACHRLGNQDAAETIAKLQAEIREMRSVKPAPRKVEVGSMVSVNKSVSANLKEEITRLHSQGSTIANLEQQLENVQRSIDKLVMSLPNNFEHITSEASPKHKKEHKRKKLLPLSSSNSANRQNFIRSPCSPLSTTQQVLESDIENRAPENDDTVSTEILPESEKETPSKSEETGDVTSKENTSGYRRSSSVNMKKMQKMFQNAAEENVRSIRAYVTELKERVAKLQYQKQLLVCQVLELEANEASGHDIENEEYTGEPEEPQVSWQVTFREQRQQILELWDVCYVSIIHRTQFYLLFKGDPADQIYIEVELRRLSWLQQHLAELGNASPAPHVGDEPTISLSSSMRALKREREFLAKRLTSRLTPEERESLYIKWDVPLDGKQRRMQFVSKLWTDPHDQKHVQESAEIVAKLVGFCTGGNMSKEMFELNFVLELEANEASGHDIENEEYTGEPEEPQVSWQVTFREQRQQILELWDVCYVSIIHRTQFYLLFKGDPADQIYIEVELRRLSWLQQHLAELGNASPAPHVGDEPTISLXSSMRSLKRERESLAKRLTSRSTPEEREALYIKWDVPLDGKQRRMQFVSKLWTDPHDQKHVQESAEIVAKLVGFCTGGNMSKEMFELNFVLPSDKRPWLLGWNPITNFLNL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01296	48807	77683	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007018 microtubule-based movement

cellular_component
GO:0005871 kinesin complex

molecular_function

GO:0003777 microtubule motor activity

GO:0005524 ATP binding

GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001296s00027386.1	PF00225.18	Kinesin	87	403	4.10E-97
Glyur001296s00027386.1	PF11995.3	DUF3490	828	992	1.20E-73
Glyur001296s00027386.1	PF11995.3	DUF3490	1023	1188	1.20E-71
Glyur001296s00027386.2	PF00225.18	Kinesin	87	403	2.90E-97
Glyur001296s00027386.2	PF11995.3	DUF3490	828	993	8.90E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.141
SRR1783600	control	3.108
SRR1783602	moderate drought stress	2.179
SRR1811619	moderate drought stress	1.949

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.770
DRR006520	Root Summer glycyrrhizin high producing strain	5.724
DRR006521	Root Winter glycyrrhizin high producing strain	0.188
DRR006522	Root Winter glycyrrhizin high producing strain	0.122
DRR006523	Root Summer glycyrrhizin low producing strain	1.038
DRR006524	Root Summer glycyrrhizin low producing strain	1.082
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.980
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.897

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.843
SRR2868004	Drought Stress (root)	6.036
SRR2967015	Control (root)	7.932

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.520
SRR9715740	Leaf	0.167
SRR9715741	Leaf	0.567
SRR9715739	Root	0.180
SRR9715742	Root	1.104
SRR9715743	Root	0.912

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.421
SRR8749028	MeJA induced 9h	15.655
SRR8749029	MeJA induced 9h	11.609
SRR8749030	Uninduced	0.441
SRR8749031	Uninduced	0.258
SRR8749032	Uninduced	0.776

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.139
SRR8400027	Control - Root	8.119