Gene detail information of Glyur001296s00027385 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15030.1 | 3.00E-50 | Protein of unknown function (DUF789) |
| NR | XP_003534161.1 | 6.50E-170 | PREDICTED: uncharacterized protein LOC100775751 [Glycine max] |
| trEMBL | tr|I1L4A0|I1L4A0_SOYBN | 2.00E-170 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G31280.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01296 | 43154 | 47476 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001296s00027385.1 | PF05623.7 | DUF789 | 82 | 198 | 1.10E-35 |
| Glyur001296s00027385.1 | PF05623.7 | DUF789 | 203 | 326 | 1.00E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.328 |
| SRR1783600 | control | 8.159 |
| SRR1783602 | moderate drought stress | 8.881 |
| SRR1811619 | moderate drought stress | 8.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.159 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.336 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.861 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.705 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.507 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.671 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.546 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.808 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.759 |
| SRR2868004 | Drought Stress (root) | 9.531 |
| SRR2967015 | Control (root) | 9.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.216 |
| SRR9715740 | Leaf | 4.554 |
| SRR9715741 | Leaf | 2.853 |
| SRR9715739 | Root | 0.913 |
| SRR9715742 | Root | 4.728 |
| SRR9715743 | Root | 4.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.071 |
| SRR8749028 | MeJA induced 9h | 3.007 |
| SRR8749029 | MeJA induced 9h | 4.086 |
| SRR8749030 | Uninduced | 1.662 |
| SRR8749031 | Uninduced | 1.217 |
| SRR8749032 | Uninduced | 1.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.866 |
| SRR8400027 | Control - Root | 17.665 |