Gene detail

Gene detail information of Glyur001296s00027382.3

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G38210.1	2.00E-79	Protein kinase family protein
NR	KHN20769.1	0	Putative serine/threonine-protein kinase [Glycine soja]
COG	YP_001542803.1	9.00E-38	serine/threonine protein kinase [Herpetosiphon aurantiacus DSM 785]
Swissprot	tr\|P0C5E2\|Y1839_ARATH	1.00E-92	Probable serine/threonine-protein kinase At1g18390 (Precursor)
trEMBL	tr\|V7C5U5\|V7C5U5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW24723.1}

Sequence

Transcript Sequence

>Glyur001296s00027382.3
GAGCTCCTATTGTCGTTTACTCTTTTCTGCTTTACGCGTTTCTTCCAGCTGAGAAGGCAGAGTCTGGTAACTGCAATAGATCTTTCATATTTTCTGCAGAATACAAGTTTAAAAGCTACCTTTTGTTTATCTTGATTGAGCCTCACAGAAAATTTGCATCCATCCCTCTTGATNCTCCAAAAGTTCTCAATTTCATAGGAAAACCACACAAGAAACATGCTTTTTAGATTACTTTGTTCCCAAAGGTGAGACTGTCTCTCTCTCTCACTGTCACAATACTTAGATCACTTTGGTTTCTCTGAATTTGGGTTTGTAAGGAACTTTCTGTGTAAATGATTCTAACCCCTTGAGGTAATGATTTCCAAATATGTAAAATTTAGGGTCTTAATATCTTGGGGTTGTACTAATCAATCATAGATCATAAGTGGTATATCAGTGATGCCAATCTTATCTTTTTTATCTCGCTGTTTCTACCCTGATGGGAGTAGAAACCACACTTCACNACCAATTGGTTCTTCTGAGGTGAAGGGNAGTGGTGACCAACTGGTGTCTGTGGATTCTAAGGTTCAAACCAGGTGGAGTGAATCAGTGCCTGNGAATGTGATCTCTGAGCTACCACCAAGTAATCATCATGGTCAATCAATGTTGGTTGATTCTAAGGTTCTGAACAACAACAGCCACCAATGCCACAACACAAGTGAGATCTTCAAGTATTCTGAACTTGAAGAAGCCACCAACAATTTTGATCCTAGTAGAATACTTGGGAGTGGAGGCTATGGGACAGTATACTCTGACAGATTCAAGCTCTTAAGATTAAATGATAAGAAGCTTGAGGGGGAGAGACTTGGGAAGTTCATGAATGAAGTTGCAATGTTAACTGGCATGAGGCATGAAAACCTTGTCCAACTGTATGGCTGCACCTCTCCCCAGACCCGTGAGCTGCTTCTCGTGCAAGAATACATTCCAAACGGAACTCTGGCTCGTCGTCTCCGTCTTCATCTTCATCATTTTGCAATGGATAAAATCTTTTGTGGACAGCTCCAAAAGATTGTTGACCCAGATCTTGGATTTGAATCAGACAAGTGGATAAGTGAGACAATAAATGCAGTGGCAGAGTTGGCAGCATTTAGCTGCCTACAACCACATAGAGACATGAGACCTTCCATGGGTGAGGTTTTGAGTACTCTTGAGAGCATTAGAAGTGGAAGTTCTNAAAATGCTCTTAATTGGGGTCCTAATAGTTGTTATAATCCCACCAAAGTGCACATTGTGTCCCGCTTGCCTGATGATTATTTTGAGAAGAAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01296	21458	31048	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001296s00027382.3	PF07714.12	Pkinase_Tyr	106	197	3.60E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.311
SRR1783600	control	3.405
SRR1783602	moderate drought stress	1.658
SRR1811619	moderate drought stress	1.660

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.773
DRR006520	Root Summer glycyrrhizin high producing strain	13.738
DRR006521	Root Winter glycyrrhizin high producing strain	6.293
DRR006522	Root Winter glycyrrhizin high producing strain	6.016
DRR006523	Root Summer glycyrrhizin low producing strain	19.891
DRR006524	Root Summer glycyrrhizin low producing strain	20.473
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.294
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.277

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.835
SRR2868004	Drought Stress (root)	3.352
SRR2967015	Control (root)	2.793

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.715
SRR9715740	Leaf	3.248
SRR9715741	Leaf	5.868
SRR9715739	Root	4.304
SRR9715742	Root	7.983
SRR9715743	Root	7.551

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.224
SRR8749028	MeJA induced 9h	22.555
SRR8749029	MeJA induced 9h	27.360
SRR8749030	Uninduced	24.928
SRR8749031	Uninduced	41.082
SRR8749032	Uninduced	28.876

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.268
SRR8400027	Control - Root	12.056