Gene detail information of Glyur001296s00027377 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18390.2 | 5.00E-18 | Protein kinase superfamily protein |
| NR | KEH27001.1 | 3.54E-121 | wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula] |
| Swissprot | tr|P0C5E2|Y1839_ARATH | 3.00E-24 | Probable serine/threonine-protein kinase At1g18390 (Precursor) |
| trEMBL | tr|A0A072UC20|A0A072UC20_MEDTR | 1.00E-121 | Wall-associated receptor kinase galacturonan-binding protein {ECO:0000313|EMBL:KEH27001.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01296 | 10220 | 11743 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001296s00027377.1 | PF13947.1 | GUB_WAK_bind | 36 | 126 | 4.50E-10 |
| Glyur001296s00027377.1 | PF14380.1 | WAK_assoc | 150 | 247 | 3.00E-17 |
| Glyur001296s00027377.2 | PF13947.1 | GUB_WAK_bind | 36 | 126 | 4.30E-10 |
| Glyur001296s00027377.2 | PF14380.1 | WAK_assoc | 150 | 247 | 2.90E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.079 |
| SRR1783600 | control | 8.078 |
| SRR1783602 | moderate drought stress | 0.799 |
| SRR1811619 | moderate drought stress | 0.406 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.790 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.723 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.330 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.270 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.590 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.942 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.645 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.761 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.695 |
| SRR2868004 | Drought Stress (root) | 3.081 |
| SRR2967015 | Control (root) | 3.897 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.547 |
| SRR9715740 | Leaf | 0.572 |
| SRR9715741 | Leaf | 0.359 |
| SRR9715739 | Root | 0.573 |
| SRR9715742 | Root | 0.193 |
| SRR9715743 | Root | 0.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.437 |
| SRR8749028 | MeJA induced 9h | 31.214 |
| SRR8749029 | MeJA induced 9h | 21.014 |
| SRR8749030 | Uninduced | 4.476 |
| SRR8749031 | Uninduced | 3.730 |
| SRR8749032 | Uninduced | 3.996 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.619 |
| SRR8400027 | Control - Root | 2.190 |