Gene detail

Gene detail information of Glyur001294s00037238

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G36930.2	7.00E-119	Disease resistance protein (TIR-NBS-LRR class) family
NR	XP_003620113.1	0	Resistance protein PRG [Medicago truncatula]
COG	YP_003115980.1	2.00E-07	SARP family transcriptional regulator [Catenulispora acidiphila DSM 44928]
Swissprot	tr\|Q40392\|TMVRN_NICGU	1.00E-151	TMV resistance protein N
trEMBL	tr\|G7KK77\|G7KK77_MEDTR	0	Functional resistance protein KR1, putative {ECO:0000313\|EMBL:AES76331.2}

Sequence

Transcript Sequence

>Glyur001294s00037238.1
ATGGCTCTGCATTCACCCCGTTCCTCTCCTTCTTCTTCTTCTTCCTTCTCCTATGGATTCACTTACAGTGTGTTCCTCAGTTTCAGAGGTTGTGACACTCGCTTCGGTTTTACTGGCAATCTCTACAAGGCTCTTTTTGACAAGGGAATCCACACCTTCTTTGATGACAGGGAGCTTCATGGAGGGGAAGAAATCACAACATCACTCTTCAAGGCCATTGAAGAGTCCAAGGTTGCCATTCCTGTGTTCTCTAGAAACTATGCTTCCTCTTCATTTTGCTTGGACGAACTTGTCCGCATCATGGAGTGCTTCAAGGCAGAGGGTCGCCTAGTGTTGCCAGTTTTCTATGATGTAGATCCTTCTCACGTGCGACATCAAACTGGGAGTTACGGTGAAGCAATAGCTAAGCATGAAGCCAAGTTCCAAAATAATATTGACCACATAGAGAAGTTGCGCAAATGGAAGATGGCTCTTAACCAAGTGGCTAACTTGTCCGGTCATCACTTCAAACATGGGAATGAATATGAACATGAGTTTATTGCGAAGATAGTTGAATTGGTCTTTAACAAGATCAATCGTGCTCCTTTACATGTTGCGGATTACCCAGTTGGATTGGAGTCTCGAGTGCAACAAGTAAAGTCACTTCTAGATGCAGGATCTGATGATGAAGTGCTCATTGTAGGGATATGTGGAATTGGCGGAGTGGGTAAAACAACACTTGCAAGAGAAACTTATAATTTGATTGCTAATCAGTTTGAAGGTTTATGTTTTCTTCATAAGGTGAGAGAAAGTTCAATTGAACATCTCCAGGAGAAGCTCCTTTTCACAACAATTGGATTGAACATCAAGATAGAAGATGTCAATGAAGGAATCCCAATCATAAAGCAAAGGCTACACCAAAGGAAGGTTCTTTTGATTCTTGATGATGTTGACAAAATGGAACAATTAGGGGGTTTGGCTGGAGGACCTGATTGGTTCGGCCCAGGCAGCAAAGTCATCATCACCACTCGAGACAAACAGTTGCTAGCATGTCAAGGGATTGAAAAAACATATGAGGTAGATGGGTTAAATGAGGAAGAAGCTCTTAAATTGTTGAGGTGGAAAGCCTTTAAAGGTAACAAAGTTGACTCAAGTTACAACTACGTTATAAACCGTTCAATAACTTATGCTTCTGGCCTTCCATTAGCTTTAGAAGTAGTGGGTTCCAACTTGTTTGGAAAGGACATAGATGAATGGCAATCTACATTAGATCGGTATGAAAGGATTCCTAATAAAAAGATCCAAGAGATACTTAAAGTAAGCTTCAATGATTTGGAAGAAGAAGAACAATGTGTTTTTCTCGACATTGCATGTTGTTTCAACGGATATGAATTAGAGTGGCTTGAAGATATCCTTTCTGCTCATCATGATCAATGCATAAAACATCATATTGGAGTTTTGGTTGAAAAATCTCTTATAGAGATTAGAGATAGTGGTTTTGATAATTATGTGACATTACATGACTTGATAGAGGACATGGGTAAAGAAATTGTCCGACAAGAATCATTGAAAGAGCCTGGGGAACGCAGTAGGTTGTGGCTCCATAAAGACATAGTTCAAGTTTTAGAAGAAAATACGTCCCCATCATCTAAAGAAGTGGTAGAATGGAAAGGAGATGAACTCAAGAACATGAAAAATCTCAAAACAATTATTATTGAAAGAGGTCAGTTTTTCAAAGGTCCGAATTATCTTCCAAATAGTTTAAGAGTACTAGATTGGCGTGACTACCCTTCACAAGATTTACCATGTGGTTTTTGCCCAAAGAAACTTTCTGTATGCCAGTTAGGAAGAAGTTGCCTTACATCATTTCGGTTGAGTGGCTCTTTGAAGGAGTTCACAAATATGAGAGTTTTGATCTTTTACTCATGTAAATATTTTAAACACATACCTGACGTATCTGGTCTCCCAAATTTAGAACAACTTTGGTTTACTGGCTGTACAAATTTAATTTCAATTCACAAATCTGTTGGGTTCTTGAATAAACTTAAAAGCTTGAATGCCAAAGGTTGCAGCAAGCTTTGGAGTTTTCCACCCATAAGGTTGACATCTCTTCAGCAACTGGAACTTTCAGATTGTAGTAGTCTCGAGATTTTTCCTGAAATATTAAGAGAGATGGGAAATATAACGGAGCTTTGTATGTTTTCCACTTCTATAAAAGAATTGCCATCTTCGTTTCAAAACCTCAATGGGCTTCTTAAGTTAAATTTTAAGGGTAGTGGACTGCTCAAGTTACCAAATAGCATTGTCATGATGTCAAAATTGTCAATGATTACTGTTAAGGGTTGTCATTTATTGCCAAAAGAAAAAGAAAAGTTGAGTTCCATGGTGTCTTCAAATGTAGAATTTCTTGAGCTCCTAAAATGCGACCTGTCAGATGAATTTCTTCAAATAGGTCTCAGGTGGTTTGCTAATGTCAAAACATTAAACCTAAGCATGAGTACTAATTTCACAATTCTTCCCGAATGCATCAAAGAATGTCTCTTTTTAAGGGAACTTTATTTGGATGATTGCAAGCACCTTCGAGAAATTAGAGGGATTCCGCCAAATTTAAAAGTTTTGTCCGCAAAAGACTGTAAATCTTTGGCTTCCTCGTGTAGAAGCAAGCTACTGAATCAGGAACTGCATGAGGCTGTAGGTACCTATTTTTGTTTTTCGGGAACTGCAAGGATTCCAGAGTGGGTGGAGCACCATAGCAGGAGAGGGTCAATCTCATTTTGGTTTCGTAACAAGATCCCTTCCATAGCTCTCTTCATTTCTAGTAAATTGTTTCATGATGATAGGGAGTGGGTCAACAACGAGTGGGTCGGCAATGATTATAATGCACAGTTAACATCCAAGCTGATCATTAATGGCCATATATGTACTGATGACGACATCCATCTTCGGACAGTAAAAGAGGTTCATACGTCTCTATATGACCTGGAACTGCCAAAACTTGAATATAAACTGGACGAAGCACTTTCAAAAAATGAATGGATCCATGCGGAGATTATATTTTTGGATTACAAAACTTTCCTTGGACGGAGATGGTGCTCCATTGAATTTGGAATCCATTTAACTCGTAGAATCGGTAGACTCGCGAGTCTAGGTAGCAAAAACGAGTCTGCAAACTCGGAAATTGGTAGAATCGGGAGCGAGTTTACGATTCTGAAAAAAAATGAAGATGGTGATGAATTTGTGGATGATGATGATGATGGAGATCATACTAATGAAGATGAGGATGAGGATGTGGGAGGATTGGACATGGATTAG

Protein Sequence

>Glyur001294s00037238.1
MALHSPRSSPSSSSSFSYGFTYSVFLSFRGCDTRFGFTGNLYKALFDKGIHTFFDDRELHGGEEITTSLFKAIEESKVAIPVFSRNYASSSFCLDELVRIMECFKAEGRLVLPVFYDVDPSHVRHQTGSYGEAIAKHEAKFQNNIDHIEKLRKWKMALNQVANLSGHHFKHGNEYEHEFIAKIVELVFNKINRAPLHVADYPVGLESRVQQVKSLLDAGSDDEVLIVGICGIGGVGKTTLARETYNLIANQFEGLCFLHKVRESSIEHLQEKLLFTTIGLNIKIEDVNEGIPIIKQRLHQRKVLLILDDVDKMEQLGGLAGGPDWFGPGSKVIITTRDKQLLACQGIEKTYEVDGLNEEEALKLLRWKAFKGNKVDSSYNYVINRSITYASGLPLALEVVGSNLFGKDIDEWQSTLDRYERIPNKKIQEILKVSFNDLEEEEQCVFLDIACCFNGYELEWLEDILSAHHDQCIKHHIGVLVEKSLIEIRDSGFDNYVTLHDLIEDMGKEIVRQESLKEPGERSRLWLHKDIVQVLEENTSPSSKEVVEWKGDELKNMKNLKTIIIERGQFFKGPNYLPNSLRVLDWRDYPSQDLPCGFCPKKLSVCQLGRSCLTSFRLSGSLKEFTNMRVLIFYSCKYFKHIPDVSGLPNLEQLWFTGCTNLISIHKSVGFLNKLKSLNAKGCSKLWSFPPIRLTSLQQLELSDCSSLEIFPEILREMGNITELCMFSTSIKELPSSFQNLNGLLKLNFKGSGLLKLPNSIVMMSKLSMITVKGCHLLPKEKEKLSSMVSSNVEFLELLKCDLSDEFLQIGLRWFANVKTLNLSMSTNFTILPECIKECLFLRELYLDDCKHLREIRGIPPNLKVLSAKDCKSLASSCRSKLLNQELHEAVGTYFCFSGTARIPEWVEHHSRRGSISFWFRNKIPSIALFISSKLFHDDREWVNNEWVGNDYNAQLTSKLIINGHICTDDDIHLRTVKEVHTSLYDLELPKLEYKLDEALSKNEWIHAEIIFLDYKTFLGRRWCSIEFGIHLTRRIGRLASLGSKNESANSEIGRIGSEFTILKKNEDGDEFVDDDDDGDHTNEDEDEDVGGLDMD

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01294	36343	40975	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001294s00037238.1	PF01582.15	TIR	24	159	6.40E-36
Glyur001294s00037238.1	PF00931.17	NB-ARC	206	458	8.50E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.806
SRR1783600	control	0.791
SRR1783602	moderate drought stress	0.414
SRR1811619	moderate drought stress	0.363

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.072
DRR006520	Root Summer glycyrrhizin high producing strain	0.076
DRR006521	Root Winter glycyrrhizin high producing strain	0.045
DRR006522	Root Winter glycyrrhizin high producing strain	0.017
DRR006523	Root Summer glycyrrhizin low producing strain	0.028
DRR006524	Root Summer glycyrrhizin low producing strain	0.020
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.022
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.035

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.868
SRR2868004	Drought Stress (root)	4.521
SRR2967015	Control (root)	2.772

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.299
SRR9715740	Leaf	0.348
SRR9715741	Leaf	0.091
SRR9715739	Root	0.329
SRR9715742	Root	1.235
SRR9715743	Root	0.725

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.313
SRR8749028	MeJA induced 9h	0.573
SRR8749029	MeJA induced 9h	0.202
SRR8749030	Uninduced	0.660
SRR8749031	Uninduced	0.890
SRR8749032	Uninduced	0.115

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.162
SRR8400027	Control - Root	6.910