Gene detail information of Glyur001293s00032184 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43460.1 | 2.00E-45 | HR-like lesion-inducing protein-related |
| NR | KHN22196.1 | 8.99E-87 | hypothetical protein glysoja_036942 [Glycine soja] |
| trEMBL | tr|I1NER1|I1NER1_SOYBN | 3.00E-87 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G21970.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01293 | 24800 | 28586 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001293s00032184.1 | PF05514.6 | HR_lesion | 1 | 139 | 1.40E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.979 |
| SRR1783600 | control | 16.284 |
| SRR1783602 | moderate drought stress | 18.139 |
| SRR1811619 | moderate drought stress | 17.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 41.088 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 40.704 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.336 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.829 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 58.420 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 57.946 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.385 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 68.597 |
| SRR2868004 | Drought Stress (root) | 50.101 |
| SRR2967015 | Control (root) | 52.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.113 |
| SRR9715740 | Leaf | 6.991 |
| SRR9715741 | Leaf | 7.432 |
| SRR9715739 | Root | 33.192 |
| SRR9715742 | Root | 32.634 |
| SRR9715743 | Root | 26.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.741 |
| SRR8749028 | MeJA induced 9h | 19.630 |
| SRR8749029 | MeJA induced 9h | 26.031 |
| SRR8749030 | Uninduced | 15.146 |
| SRR8749031 | Uninduced | 4.822 |
| SRR8749032 | Uninduced | 9.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 53.435 |
| SRR8400027 | Control - Root | 60.886 |