Gene detail information of Glyur001292s00040215.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15290.1 | 9.00E-81 | 3-hydroxyacyl-CoA dehydrogenase family protein |
| NR | NP_001234958.1 | 1.27E-136 | peroxisomal 3-hydroxyacyl-CoA dehydrogenase-like protein [Glycine max] |
| COG | YP_002317076.1 | 9.00E-83 | 3-hydroxyacyl-CoA dehydrogenase [Anoxybacillus flavithermus WK1] |
| Swissprot | tr|Q9ZPI6|AIM1_ARATH | 2.00E-21 | 3-hydroxyacyl-CoA dehydrogenase |
| trEMBL | tr|B0M194|B0M194_SOYBN | 5.00E-137 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G39750.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01292 | 15289 | 17943 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00074 | paaH, hbd, fadB, mmgB | EC:1.1.1.157 | Butanoate metabolism | map00650 |
| Butanoate metabolism | map00650 | |||
| Phenylalanine metabolism | map00360 | |||
| Phenylalanine metabolism | map00360 | |||
| Benzoate degradation | map00362 | |||
| Benzoate degradation | map00362 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001292s00040215.2 | PF02737.13 | 3HCDH_N | 31 | 86 | 1.00E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.546 |
| SRR1783600 | control | 18.471 |
| SRR1783602 | moderate drought stress | 71.478 |
| SRR1811619 | moderate drought stress | 70.582 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 45.671 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 44.493 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 89.133 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 84.824 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 42.902 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 42.376 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.900 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.646 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 43.214 |
| SRR2868004 | Drought Stress (root) | 68.967 |
| SRR2967015 | Control (root) | 71.727 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 43.001 |
| SRR9715740 | Leaf | 42.214 |
| SRR9715741 | Leaf | 52.419 |
| SRR9715739 | Root | 85.865 |
| SRR9715742 | Root | 57.921 |
| SRR9715743 | Root | 63.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.573 |
| SRR8749028 | MeJA induced 9h | 67.755 |
| SRR8749029 | MeJA induced 9h | 26.962 |
| SRR8749030 | Uninduced | 105.566 |
| SRR8749031 | Uninduced | 87.053 |
| SRR8749032 | Uninduced | 97.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 69.889 |
| SRR8400027 | Control - Root | 62.632 |