Gene detail

Gene detail information of Glyur001290s00040713

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G40940.1	9.00E-38	putative fasciclin-like arabinogalactan protein 20
NR	XP_004490159.1	4.89E-135	PREDICTED: putative fasciclin-like arabinogalactan protein 20-like [Cicer arietinum]
Swissprot	tr\|Q9FGW0\|FLA20_ARATH	1.00E-47	Putative fasciclin-like arabinogalactan protein 20
trEMBL	tr\|G7JWT5\|G7JWT5_MEDTR	1.00E-132	Fasciclin-like arabinogalactan protein {ECO:0000313\|EMBL:AES97010.1}

Sequence

Transcript Sequence

>Glyur001290s00040713.1
ATGGCTTCTTCATCAACAACAACAATATNCTTCACTCTCTCTCTCCTCTTCTCCCTCTCCTCGTGCCTCCCTTCCTCAACCATCCTCGACGCCGCCGAGATCCTCTCCACCTCCGGCTTCGAAGCAATGGCCTTCAACCTCGAGCTTGCGTCGCAAACCCTCGCCCGGCGACAAACTCGCTCCCTCACAGTCTTCGCCCCAACCGACTTCGCCTTCAAGCAGATCGCTCAGCTCCCACTCTCCCTCCTCCGCTACCACCTCCTCCCACACGCCTTCTCTCTCCACAGCCTTAGCTCCCTCCCCTTCGGCGCCAACATCGCCACCCTCCTCAACGGCCACTCCCTNANCGTCACCACCTCAAACCACCGTCTCTCCATCAACAACGTCACCGTCCACCATTCCCCTGTTTTCGACGACGGCCACCTCGTCATCTTCCGTACCGACTCCTTCTTCGATCCCTATTTCCAGCTTCCCGNCCAATCTCCACGCCACAGCGATGCCGCCACCACCACCTCCGCCGCNTCCCCCGCCGCCTGTTTTCGAAAGAATGGCGGGAGGCGGTTTTCAACTGACGTGGTATCTTCTTTTAAGGAAGCGAGTGGCGTGTTGAGAGCAAGAGGATGCTCTGTTATGGCCTCTGTTCTCGATGTGCAGTTCCTAGTAGGGCTTAAGGACCGTCCTCAGCTCACGTTGTTTGCGCCGATCGACGAGGCCCTATCGGTGAGCCACGTGGCGAATAATAACCTGAGCGATTGCAGCACCATCCTCCGCCGCCACCTCGTGCCTTGTAAGATCGCGTGGAGCGATTTGGTGACGATGGATGAGGGAACGTTGGTTTGGACTTACGAGAGAGGGTTCACGCTGAATGTCACCAAGTCTAGCACTGACATGTTGTTGCTCAATGGTGTGCCCGTGGTTTTCCCCGAGCTTTATTACAGTGATTGGCTTGTGGTTCATGGACTCCGAGAAGTTCTCTCCGTTAATTCGAAGGGATTAGCAGATCAGCCAGCGGAGGATGATGATGATTCGGTTCAGATTTCGGAGTCTCCGTTTGATCAGTTTAGTCACAATGGTGCGCAAAACCCTGCTACAGAACNTTACCACTTCTCTGTTTTTCATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01290	35243	36364	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001290s00040713.1	PF02469.17	Fasciclin	50	134	3.10E-08
Glyur001290s00040713.1	PF02469.17	Fasciclin	221	325	3.80E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.138
SRR1783600	control	12.891
SRR1783602	moderate drought stress	3.098
SRR1811619	moderate drought stress	2.981

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.251
DRR006520	Root Summer glycyrrhizin high producing strain	4.048
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.945
DRR006524	Root Summer glycyrrhizin low producing strain	3.057
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.495
SRR2868004	Drought Stress (root)	0.444
SRR2967015	Control (root)	0.153

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.162
SRR9715740	Leaf	0.023
SRR9715741	Leaf	0.058
SRR9715739	Root	5.992
SRR9715742	Root	2.429
SRR9715743	Root	3.537

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.163
SRR8749028	MeJA induced 9h	4.735
SRR8749029	MeJA induced 9h	4.085
SRR8749030	Uninduced	0.989
SRR8749031	Uninduced	0.417
SRR8749032	Uninduced	0.312

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.535
SRR8400027	Control - Root	2.855