Gene detail information of Glyur001288s00028008 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G61930.2 | 3.00E-74 | Arabidopsis thaliana protein of unknown function (DUF794) |
| NR | XP_003537145.1 | 0 | PREDICTED: APO protein 3, mitochondrial-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9FH50|APO3_ARATH | 3.00E-98 | APO protein 3, mitochondrial (Precursor) |
| trEMBL | tr|I1L9Q1|I1L9Q1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G11010.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01288 | 74997 | 78167 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001288s00028008.1 | PF05634.6 | APO_RNA-bind | 40 | 226 | 1.40E-64 |
| Glyur001288s00028008.1 | PF05634.6 | APO_RNA-bind | 266 | 386 | 2.90E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.220 |
| SRR1783600 | control | 3.285 |
| SRR1783602 | moderate drought stress | 3.654 |
| SRR1811619 | moderate drought stress | 3.571 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.698 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.603 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.105 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.759 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.682 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.667 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.232 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.301 |
| SRR2868004 | Drought Stress (root) | 12.147 |
| SRR2967015 | Control (root) | 12.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.695 |
| SRR9715740 | Leaf | 8.092 |
| SRR9715741 | Leaf | 7.863 |
| SRR9715739 | Root | 1.311 |
| SRR9715742 | Root | 3.910 |
| SRR9715743 | Root | 4.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.195 |
| SRR8749028 | MeJA induced 9h | 7.251 |
| SRR8749029 | MeJA induced 9h | 6.453 |
| SRR8749030 | Uninduced | 3.516 |
| SRR8749031 | Uninduced | 2.122 |
| SRR8749032 | Uninduced | 2.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.164 |
| SRR8400027 | Control - Root | 6.540 |