Gene detail

Gene detail information of Glyur001288s00028007.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38910.1	0	calcium-dependent protein kinase 20
NR	XP_004497622.1	0	PREDICTED: calcium-dependent protein kinase 20-like [Cicer arietinum]
COG	YP_642814.1	9.00E-31	serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
Swissprot	tr\|Q9ZV15\|CDPKK_ARATH	0	Calcium-dependent protein kinase 20
trEMBL	tr\|A0A072VIE3\|A0A072VIE3_MEDTR	0	Calmodulin-domain kinase CDPK protein {ECO:0000313\|EMBL:KEH41799.1}

Sequence

Transcript Sequence

>Glyur001288s00028007.1
ATGGGCAACAACTGNGTGGGACCAAACCTCGGTGGGAATGGCTTCCTTCAATCCGTCACGGCGGCGGTTTGGAAAACCCGACCGCCGGAGGCAAGGCTTCCGCNGCCAAACGCCGAAGACAAGAACAAACCCCCTGCGCCGGAGAGTGCGGCCACGGATTCCTCCAAAGGAGGAGGGTCGAGTGCTGCCGGCAAGNGTTCCTCCCCGGACGCCGCTCCCAAAGGNTCCGGTGNCCCTCCCATGCCTGTCCAGAGCACNCCGCCCGAGACGGTTAAAATAACCGCCGTGGAATCAAAACCGGTCCTGGTTCAGGCACCGGTTCAACCGGCGGTAAATAACGAGCCGGCATCTAGTGCCGGTGCCGCCGGGGGTGGGGATGCAGGGAAAGCTAAGAAGCCTACTCATGTTAAAAGGGTGTCAAGTGTGGGACTTCAAGTGGAATCTGTGTTGGGTAGGAAAACTGAGAACATGAAGGACTTTTATAGCTTGGGGAGGAAGTTAGGGCAAGGGCAATTTGGGACAACTTTCCTTTGTGTGGAGAAAGGGACTAACAAGGACTTTGCTTGTAAATCCATTGCAAAGAGGAAATTGACCACACAGGAGGATGTGGAGGATGTTAGNAGGGAGATTCAGATCATGCACCACTTGGCTGGTCACCCAAATGTGATCCAGATAATTGGGGCTTATGAGGATGCTGTTGCTGTCCATGTTGTTATGGAGCTCTGTGCTGGTGGGGAGCTCTTTGATAGGATCATACAGAGAGGGCATTACACTGAGAGAAAGGCTGCTGAACTTGCTAGGCTGATACTNAGTGTTGTTGAGGCTTGCCATTCTTTAGGTGTCATGCATAGGGACTTGAAGCCTGAGAATTTCCTCTTCGTCAACCATGAAGAAGAATCACCACTTAAGACAATAGATTTCGGACTCTCTGTGTTCTTTAGACCAGGTGAAACATTTACTGATGTGGTTGGGAGCCCATACTATGTGGCCCCTGAAGTTTTGCGGAAGCACTANGGTCCAGAATGTGATGTTTGGAGTGCTGGGGTGATAATTTATATTTTACTCAGTGGAGTACCCCCGTTTTGGGATGAAACGGAACAAGGAATATTTGAGCAAGTATTGAAAGGAGAGCTTGACTTTGTTTCTGAACCATGGCCTAGCATATCTGAAAGTGCAAAGGATCTTATTCGAAGAATGCTCATAAGGGACCCGAAGAAGCGGTTGACGGCACATGAAGTTCTCTGCCATCCTTGGGTTCAGGTTGGAGGTGTTGCTCCTGATAAACCGCTTGATTCTGCTGTCTTATCTCGTTTGAAGCAATTCTCTGCAATGAACAAGCTCAAAAAAATAGNCATTCGAGTAATTGCTGAAAATCTGTCTGAGGAGGAAATTGGAGGACTGAAAGAAATGTTCAAGATGATAGACACAGATAATAGTGGACAGATCACTCTCGAGGAACTGAAAAATGGCTTAGAGAGAGTGGGATCCGTTCTTAAGGATTCTGAAATTCACTGGTTAATGCAAGCGGCAGACATTGATAATAGTGGTACCATAGACTATGGTGAATTTATAGCAGCTATGCTTCATCTAAACAAGGTCCAGAAGGAGGATCATCTATATGCAGCCTTCTCCTACTTTGACAAAGATGGGAGTGGATACATTACAAAGGATGAGCTCCAACAAGCCTGTCAACAGTTTGGCCTAAAAGACGATCATCTAGATGATATAATACGTGAAGCTGACCGCAATAATGATGGACGNATTGATTACAGTGAGTTTGTTGAAATGATGCAAGACACTGGTTTTGGTAAAAAAGGGCTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01288	66653	71753	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13412	CPK	EC:2.7.11.1	Plant-pathogen interaction	map04626
			Toxoplasmosis	map05145

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005509 calcium ion binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001288s00028007.1	PF00069.20	Pkinase	161	419	1.30E-70
Glyur001288s00028007.1	PF13499.1	EF-hand_7	467	527	2.20E-11
Glyur001288s00028007.1	PF13499.1	EF-hand_7	541	597	3.10E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.039
SRR1783600	control	0.020
SRR1783602	moderate drought stress	0.109
SRR1811619	moderate drought stress	0.040

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.355
DRR006520	Root Summer glycyrrhizin high producing strain	0.282
DRR006521	Root Winter glycyrrhizin high producing strain	0.305
DRR006522	Root Winter glycyrrhizin high producing strain	0.298
DRR006523	Root Summer glycyrrhizin low producing strain	0.726
DRR006524	Root Summer glycyrrhizin low producing strain	0.673
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.050
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.050

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.904
SRR2868004	Drought Stress (root)	0.646
SRR2967015	Control (root)	0.863

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.167
SRR9715740	Leaf	0.226
SRR9715741	Leaf	0.140
SRR9715739	Root	0.000
SRR9715742	Root	0.013
SRR9715743	Root	0.061

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.832
SRR8749028	MeJA induced 9h	2.054
SRR8749029	MeJA induced 9h	1.657
SRR8749030	Uninduced	1.970
SRR8749031	Uninduced	1.305
SRR8749032	Uninduced	1.114

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.155
SRR8400027	Control - Root	0.219