Gene detail

Gene detail information of Glyur001288s00028002

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06600.1	1.00E-27	ubiquitin-specific protease 12
NR	XP_003518025.1	5.66E-178	PREDICTED: uncharacterized protein LOC100797919 [Glycine max]
Swissprot	tr\|Q9FPT1\|UBP12_ARATH	6.00E-29	Ubiquitin carboxyl-terminal hydrolase 12
trEMBL	tr\|I1JFX1\|I1JFX1_SOYBN	2.00E-178	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G26890.1}

Sequence

Transcript Sequence

>Glyur001288s00028002.1
ATATTTTATCAACAACATCTTAGCTGGGACTTCAATTTCATTATATTATTATTACATTCTTCTTGTTANTTTTTTTATTTAATTTGTTTTCTATTTATTGGAGAAATAATATATTTCTTTAATCACAGAAAAGCACCAGATGCACCAACCAGACTGGTGAATGAGGAGGTGGTGTCAACTGCAAGTACTAGTGCTGATCATGGTTTTGGCANATTCACATGGAGAATTGAAGATTTCTCAAAACAGAATGCCATGAAACTACGCTCCCAGGCTTTCAAAATCCGCGGTTATACATGGAGGATCCTTGTGTATCCACTGAGGAGGGATGTGAACCACTTTTCCTTGTATTTGATGGTTGCTGATTCTTTACCACCGTATGGATGGAGCAGAAACACGTTTTTCAAGTTAGCTCTGATCAATCAAGTGGATAGNAACAAGTCCATTGTAAAAGAGACTCAGCAAAAGTTCAATGGAGGGTATCGTAGCTGGGGTTCATATTTCCTGAATCTCACTGACTTTTGTGACCACAAACAAGGGTATCTTGTGAGGGATACATGCATCATTGAAGCTCATATTTGTGTCTCTGATTTTCTACCTAAGATTAATATTGCTCAAGACATCAATCCTCAAGCATTAACAACAGANCAATCCTCAGATGAGAGTCCCGGAACCTCATCATCAGGGTCTAGTACTCCAAGTTCAGAACATTTGACACTGAGAGAACTCATGGATTTTGAGAGTTTAGGACCAGAAGAACTAGAAGCTAATTTTGTTCCACTATTGGAAGAGGTTTGCATNTGGCACCCTTCCCTGATTCAGTGCCAGAGGAAAAGGACACGTTGGTTCAGACAATGGGCATTCACATCATTAGGCCAAGTTCTGCATTTCCTCAAGACAAAGAAGGTGAAGGATATGAGTGAAGGTGANATCAAGAGCCTTGAGAGGCTTTGGGAGGAACTTGTAAAGTCCTCAGGGTTTGATTTGGATTGGTTGGAGCCTTATGTTCAATCTGCTTTGGGTGTGAAGGCTCATTTGGAAAGAGCAGAGAAAGTGAAGAAGCTGAAGGATAGTGTGGTTGGTTTGGAGATTAAGATGAAGAAGCTGAGGGGTGAACTTGCTGCTGCTGAAGCACAGTTTGAGGTTGCAAGGAAAGGGTTATCAGAAGTAAGGAAAGGGTTCCAAGAAATGAATGTAAATGCTCCAATTGGTTATGCTATGTTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01288	35694	37358	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001288s00028002.1	PF00917.21	MATH	76	192	1.10E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.654
SRR1783600	control	0.682
SRR1783602	moderate drought stress	0.881
SRR1811619	moderate drought stress	0.792

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.191
DRR006520	Root Summer glycyrrhizin high producing strain	1.062
DRR006521	Root Winter glycyrrhizin high producing strain	0.090
DRR006522	Root Winter glycyrrhizin high producing strain	0.055
DRR006523	Root Summer glycyrrhizin low producing strain	2.530
DRR006524	Root Summer glycyrrhizin low producing strain	2.365
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.841
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.930

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.292
SRR2868004	Drought Stress (root)	16.224
SRR2967015	Control (root)	12.989

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.287
SRR9715740	Leaf	0.863
SRR9715741	Leaf	3.128
SRR9715739	Root	0.921
SRR9715742	Root	1.941
SRR9715743	Root	0.893

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.737
SRR8749028	MeJA induced 9h	31.565
SRR8749029	MeJA induced 9h	31.209
SRR8749030	Uninduced	64.772
SRR8749031	Uninduced	32.308
SRR8749032	Uninduced	17.686

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.942
SRR8400027	Control - Root	4.827