Gene detail

Gene detail information of Glyur001288s00027999

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11930.1	6.00E-55	Adenine nucleotide alpha hydrolases-like superfamily protein
NR	XP_004504522.1	8.47E-108	PREDICTED: universal stress protein A-like protein-like [Cicer arietinum]
COG	YP_007102473.1	6.00E-19	UspA domain-containing protein [Pseudanabaena sp. PCC 7367]
Swissprot	tr\|Q8LGG8\|USPAL_ARATH	9.00E-18	Universal stress protein A-like protein
trEMBL	tr\|A0A072VJ06\|A0A072VJ06_MEDTR	6.00E-108	Adenine nucleotide alpha hydrolase superfamily protein {ECO:0000313\|EMBL:KEH41787.1}

Sequence

Transcript Sequence

>Glyur001288s00027999.1
CAATTCACTGTTGCAGGTTTTGTCAGCTTGTGTTGTTCTTCGGAAAAAGACAAAAGACGTACGTACGTGTCTATCCATTTCGTCCCAACAGATCAATCCATAGCAGTCAGCAGAGCTAATACTATTTCACTCGCACAGAGCATGGAAAAGAGTGTGTATTCATCTTATCTTATAAAATTAATTAAAATTATATATTGACGGTGATAANGTGTCACAACACCACATACAAGACAAAACAAATAATTAAGGAAGCAAGTGGTGGGGGTGACCATATATATATATATGGAGGAAATTAGTGGAGGCGGTTGTGCAGAGGAGAAGCGGAGGATGAAGATGAAGGTGATGGTGGCCATTGATGAGAGTGATGGGAGCTTCTATGCTCTTGAGTGGGCCCTTGACAACCTCTTAAGCTCCATGGCTATGGCTACTACTGCAGCACCTGAAAATGAGGGCATGCTCTTCCTTGTTCATGTTGAGCCTATTTTCCAAAATTATGTCTATCCCATTGGACCTGGTGGTGCTGCATTTTATCCTGCATCTGTAGTGGTGGATTCGGTGAAGAAAGCCCAACAAGAAAAATCCGCAGCTCTTCTTTCGCGAGCATTGCAAATGTGCAAGGATAGGCTGGTAAAAGCAGAAAGTGTGATTCTTAATGGAGACCCAAGGGAAATGATTTGTCAAGCCGCAGAGCAAATGCAAGTTAATCTCTTAATCATGGGTAGTCGTGGCCTTGGCACGCTCAAAAGAGCATTTCTTGGAAGTGTAAGTGACCATTGTGCACATCATGCAAAAGCACCGATTCTCATTGTGAAACCACCAGAGGAGCACCATAAAAACCACTGACAGCAGTTTTTTCTGCTTATGTTTAAGCACGTTTTTAATGTCCTTTTTTTTTTATCTAAGGCTAGGTTAATGTTTTTTCTACAGTTTTTGTAACTTATGAATGTACCGCCGATCAGGAAACTTGTGTTATGTTTTTTTCTTTTTTGGTTTTTTATTAATATCTTTATTATTTATTTCATAATAAAAGTAATGTAATGTGATCGTTGTTATTTTCTTTTTTNGGAGATCTCCTCGCATTTCTATACAAGGCCAGTGAGAAAGATGTCAATGGTGAATGAACGGGTGGAGGAGTTGGACATAAGTAAATAATAGATGCTGTTGTATCCTAGTGATGGACTAAAAATACCATCTTTATTAAGTATATAAAATAAAAACAAATAAAATTTTGGGTGGTCCAGTGTAACTCATCTTTTGAAAATCTAATACACCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01288	25008	27997	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006950 response to stress

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001288s00027999.1	PF00582.21	Usp	19	177	1.40E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	49.773
SRR1783600	control	50.149
SRR1783602	moderate drought stress	151.160
SRR1811619	moderate drought stress	149.251

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	45.973
DRR006520	Root Summer glycyrrhizin high producing strain	45.739
DRR006521	Root Winter glycyrrhizin high producing strain	668.778
DRR006522	Root Winter glycyrrhizin high producing strain	650.925
DRR006523	Root Summer glycyrrhizin low producing strain	139.470
DRR006524	Root Summer glycyrrhizin low producing strain	138.329
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.970
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.922

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.481
SRR2868004	Drought Stress (root)	50.213
SRR2967015	Control (root)	107.335

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.499
SRR9715740	Leaf	9.914
SRR9715741	Leaf	14.764
SRR9715739	Root	126.896
SRR9715742	Root	32.496
SRR9715743	Root	49.518

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.968
SRR8749028	MeJA induced 9h	10.709
SRR8749029	MeJA induced 9h	6.408
SRR8749030	Uninduced	1.149
SRR8749031	Uninduced	0.871
SRR8749032	Uninduced	1.392

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	77.296
SRR8400027	Control - Root	77.082