Gene detail

Gene detail information of Glyur001288s00027997

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G58470.1	1.00E-74	nucleic acid binding;methyltransferases
NR	XP_004504516.1	7.58E-148	PREDICTED: N(6)-adenine-specific DNA methyltransferase 2-like [Cicer arietinum]
trEMBL	tr\|A0A072VIU1\|A0A072VIU1_MEDTR	7.00E-145	N(6)-adenine-specific DNA methyltransferase {ECO:0000313\|EMBL:KEH41732.1}

Sequence

Transcript Sequence

>Glyur001288s00027997.1
CCTAGTTCGAGTTGGATGAGTTGAACGGCCCAACCTAGGCTAGATCCGGCTGGATCAGACCCGGTCCAAACATTGCAACGTTCCTCCTTCTCCTCCTATCAGTGTGCGTGCTCACTGCTCTGCATCGTCTGCACTCACACTGCACTCTGCAGGTGCACAATCCACACAGGAAGACCAGGAAGTAACATGGAGGAGCAGCTTGAGCTGAACCCTAACTCGGTGAACGGACTCAGTGAGTCCCCGGCGCCTCCCTCCTACGAAGAAGAAGAAGAAGAAGACGACGCACCAGTTCTGAGCTCCCATGCTCTCGCCGCCCTACAAGAATTCCTCGCCGAGCAGCAGAGTCACTCCGACGCCGGAGACTCGGATGAGGTTGCCCTTGTATCCGAGGATTGGAGGCTGAGCCAGTTCTGGTACGACGATGAAACCGCAAAAAGGGTCGCTGAAGAGGTTCTCACCCTCTGCAATGGCGTCGATTCTCGCGTTGCCTGCATCGCTTGCCCTACCCTCTACGCTTATCTCAAGAAGATGGATCCTAATGTATCTGCACAACTTCTGGAGTATGACAAACGTTTTGAGCAATATGGAAGTGATTACACATTTTATGACTACAATCACCCTGAGGAGTTACCGTCAGAATTGAAGCATTCCTTCAAAGTTATAGTTGCCGATCCTCCTTACTTGAGCAAAGAGTGCTTGGAGAAAGTTGCTGAAACAATTTCTTTTCTCAGACAACCTGGAGAGTCATTTTTGCTTCTACTCACGGGTGAAGTGCAGAAAGAAAGGGCAGCTGAGATATTGGGCTTGCGTCCTTGCGGTTTTAGACCTCAGCACTCCAGCAAACTTGGAAATGAATTTCGGCTGTTCTTAAACTATGACCCTGGAACGAGACTAGGAGGGTGGGAAAAATAGGTATGTAAAGTGGTCGTCGGTTCTGGATTTTCCAAAATGAAAATGATAGTGGGGAAGCTGGTATATGATGCAGGTGACAGATTTGATGTGGGAAGGTTGGACGAGCTTGTCTGCCACTATGAGGATATTGAAGCTAGTATTATGCTTGGAATTACTAATCAAATGCGAACCAAATTTATGTGGAATGAATATTAACTTCTGGGACAACGAGCACGATTTTGACTTTGCTTGTCTGAGCTATTGTCCATTTGTTCCAATTCTGTGTAAGAGGCCTATTTAGATTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01288	21019	24779	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0032259 methylation

molecular_function

GO:0003676 nucleic acid binding

GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001288s00027997.1	PF10237.4	N6-adenineMlase	72	231	2.60E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.263
SRR1783600	control	20.321
SRR1783602	moderate drought stress	27.099
SRR1811619	moderate drought stress	27.186

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.640
DRR006520	Root Summer glycyrrhizin high producing strain	20.348
DRR006521	Root Winter glycyrrhizin high producing strain	9.255
DRR006522	Root Winter glycyrrhizin high producing strain	8.951
DRR006523	Root Summer glycyrrhizin low producing strain	17.298
DRR006524	Root Summer glycyrrhizin low producing strain	17.922
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.065
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.160

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.808
SRR2868004	Drought Stress (root)	10.410
SRR2967015	Control (root)	10.566

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.260
SRR9715740	Leaf	15.865
SRR9715741	Leaf	8.673
SRR9715739	Root	9.388
SRR9715742	Root	8.740
SRR9715743	Root	9.765

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.944
SRR8749028	MeJA induced 9h	6.006
SRR8749029	MeJA induced 9h	10.023
SRR8749030	Uninduced	0.592
SRR8749031	Uninduced	0.310
SRR8749032	Uninduced	1.147

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.360
SRR8400027	Control - Root	14.768