Gene detail information of Glyur001288s00027995 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03850.1 | 1.00E-18 | Nucleic acid-binding, OB-fold-like protein |
| NR | XP_003618578.1 | 1.63E-38 | 30S ribosomal protein S28e [Medicago truncatula] |
| COG | YP_004893693.1 | 4.00E-16 | 30S ribosomal protein S28e [Thermoproteus tenax Kra 1] |
| Swissprot | tr|P46302|RS28_MAIZE | 4.00E-35 | 40S ribosomal protein S28 |
| trEMBL | tr|I1JQD4|I1JQD4_SOYBN | 3.00E-38 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G36420.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01288 | 14047 | 14265 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001288s00027995.1 | PF01200.13 | Ribosomal_S28e | 9 | 72 | 2.20E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 212.929 |
| SRR1783600 | control | 217.240 |
| SRR1783602 | moderate drought stress | 206.865 |
| SRR1811619 | moderate drought stress | 199.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1070.221 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1038.782 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 561.210 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 542.445 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 964.976 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 975.699 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 193.801 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 206.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 679.066 |
| SRR2868004 | Drought Stress (root) | 496.135 |
| SRR2967015 | Control (root) | 517.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 276.823 |
| SRR9715740 | Leaf | 284.427 |
| SRR9715741 | Leaf | 223.742 |
| SRR9715739 | Root | 517.580 |
| SRR9715742 | Root | 436.162 |
| SRR9715743 | Root | 451.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 998.892 |
| SRR8749028 | MeJA induced 9h | 399.093 |
| SRR8749029 | MeJA induced 9h | 769.199 |
| SRR8749030 | Uninduced | 214.884 |
| SRR8749031 | Uninduced | 151.317 |
| SRR8749032 | Uninduced | 285.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 601.728 |
| SRR8400027 | Control - Root | 507.419 |