Gene detail

Gene detail information of Glyur001288s00027993.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G52820.1	2.00E-115	WD-40 repeat family protein / notchless protein, putative
NR	XP_003548103.1	1.40E-163	PREDICTED: notchless protein homolog [Glycine max]
COG	YP_005066864.1	2.00E-30	serine/threonine protein kinase with WD-40 repeats [Arthrospira platensis NIES-39]
Swissprot	tr\|Q9FLX9\|NLE1_ARATH	2.00E-141	Notchless protein homolog
trEMBL	tr\|I1MP51\|I1MP51_SOYBN	5.00E-164	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G27980.1}

Sequence

Transcript Sequence

>Glyur001288s00027993.1
ATGGTAGGAGATTTCAGAGAACAAGTCTCTGATTACAATGGAAATCAGAGCTACATTGCTACAGAAGCTAAATGGCTAAGTGAAGTAATGATTGAAAACAAAGTAATGGGCAACAGAACATTGGTTGCTGGGGCAGCTCTTATTACAAAGAGCCACTTACTGCCTACCAAAAAAAAGAATTGGATTACTGGTATCTCTTGGGAACCTGTCCACCTGAATGCTCCTTGTCGTCGCTTTGTAAGTGCCAGTGAAGATGGGGTTGCTCGTATATGGGATATTTCTTTAAAGAAATGTGTTATAATTCTCAGTGGCCACAAAGAGGCAATAAACTGTGTAAAATGGGGTGGAGATGGTATGATCTATACAGGCTCCAAGGATTGTACTATCAAAGTATGGGAAACCACACAAGGGAAGCTAATTTGTGAACTGAAGGGACACGGGCACTGGGTTAATTCTTTAGCATTGAGCACTGAGTATGTTCTTCGCACTGGAGCTTTTGATCATACTGGAAAAGAATATTCATCCCCGGAGGAAATGAAGAAGGTTGCTCTTGAAAGGTACAAAACAATGAGAGGCAATGCCCCTGAAAGATTGGTCTCTGGATCTGATGATTTCACAATGTTTCTTTGGGAACCCTTTGAAAACAAGCACCCCAAAACTCGCATGACAGGTCATCAGCAGCTATGGAATGGCACTACAGGTAAATTTGTCGCTGCCTTCCGTGGCCATGTTGGGCCCGTTTACCAGATCAGTAGACTTCTTTTAAGCGGCAGCAAAGATTCTACACTCAAGGTTTGGGATATTCGGACTCGTAAGTTAAAGCAAGACCTTCCGGGCCATGCCGATGAAGTTTTTTCTGTTGATTGGAGTCCAGATGGAGAGAAGGTAGCCTCTGGTGGTAAGGATAAAGTGTTGAAGTTGTGGATGGGCTAGGCTCATTTTTTGGATGAATCTTGGGAATCTATATTGTTGGTGGTGTTGCCATTGCATGGATTTCATGGAAATCAATGGCTGGCTATTATGTGGATGCAAGATCATCTTTAAATTATATGGGCAACCTATAAGATATGAATGTGTATGAGAAATATTCTACATGCTACATTGTGATTGAGAATAGGCGCTGGAAGTGGAACAAGTTGCGCAAATTGAGTCTCCGGTAAAGAAGCTGATTGAATTGCATGGGGGCCTATCCTATGCTGTTTTGTTGTCTGCTTTGAAGTCTTTTTTTTTTTGGTATTAATGATCATAGTTAGGGCATTGTTTCTCAATGATGACGATGACTAAATATGTAAGGGTTAGCCTGAAGATGGATTTTTGTTGGCCATGATGACACTTGTTTAGTCTTTGAATGGAGTATTTAAAATATAAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01288	566	4907	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001288s00027993.1	PF00400.27	WD40	60	92	0.00032
Glyur001288s00027993.1	PF00400.27	WD40	97	133	5.10E-11
Glyur001288s00027993.1	PF00400.27	WD40	137	211	3.30E-05
Glyur001288s00027993.1	PF00400.27	WD40	251	267	0.0028
Glyur001288s00027993.1	PF00400.27	WD40	272	308	2.50E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.577
SRR1783600	control	19.947
SRR1783602	moderate drought stress	24.543
SRR1811619	moderate drought stress	24.912

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.778
DRR006520	Root Summer glycyrrhizin high producing strain	24.547
DRR006521	Root Winter glycyrrhizin high producing strain	33.006
DRR006522	Root Winter glycyrrhizin high producing strain	31.348
DRR006523	Root Summer glycyrrhizin low producing strain	21.347
DRR006524	Root Summer glycyrrhizin low producing strain	23.613
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.375
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.348

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.785
SRR2868004	Drought Stress (root)	27.339
SRR2967015	Control (root)	25.244

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.421
SRR9715740	Leaf	20.431
SRR9715741	Leaf	23.737
SRR9715739	Root	12.312
SRR9715742	Root	25.709
SRR9715743	Root	23.398

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.204
SRR8749028	MeJA induced 9h	15.017
SRR8749029	MeJA induced 9h	18.947
SRR8749030	Uninduced	10.452
SRR8749031	Uninduced	7.719
SRR8749032	Uninduced	11.893

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.467
SRR8400027	Control - Root	19.520