Gene detail

Gene detail information of Glyur001287s00026988

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52430.1	2.00E-75	alpha/beta-Hydrolases superfamily protein
NR	NP_001242860.1	0	uncharacterized protein LOC100788725 [Glycine max]
COG	YP_005372852.1	1.00E-07	lipase [Corallococcus coralloides DSM 2259]
Swissprot	tr\|Q9S745\|PAD4_ARATH	3.00E-94	Lipase-like PAD4
trEMBL	tr\|D2DF32\|D2DF32_SOYBN	0	PAD4 {ECO:0000313\|EMBL:ACQ57001.1}

Sequence

Transcript Sequence

>Glyur001287s00026988.1
CTTTTTTTTTTATATAACACTTTTTTACTCTTTTATCTTATGTTCCGAAAAATCAATACATTTAAAAAAAAATTATTTACTTTGTGATTATAAGAAAATAATCTGCGAGAATACAGAATCAGAGTGGATAAACTTCATATAGCAAACTTTTATAGTGGTTATGGTGGTAATGACTTTTCTATTTAATATCATCATCACAATGTACAAAAAGCAAAGAACAATTTTTGCAGTGTGAACTGAACAGTTCGTCGTATTCCAAGATGTGGTGAGTGCTAACAACCAAGCCACCTTGATTAGTGCTTACAACTTGCCGTTTGATACAGAAAGGGTCCANGATTCCAATTTGAAATGGTTGACTTTTACTTTTAAGTAGCAGTTGCCTCCATCATCTAGAAGATAATGCCATAGAGGGGNTTTGATTTTCAGAGTAAAAAATTCAATTAAAACTTCCATTACACTTTTCCATTGCCTTCATTACAATATGATGGCGTTTGTTAATAGAAAAATGTATTATACAGCAAATTGTGATGATCCAATACCAGCACTAGTTGACCGGCGAAATGCCCAAAAAGAAAGTCATTTTTAATTTTAAATCTAGTGGTAACTTTTTTTTTTTGTTTGGGTGGGGGTGGGGTTATAAGAAAACAGTAACACATTGCCGTCGTATTGAGTGCGTGTGAAAGGGATCGATTCTATCGTTTAGCCTGACCTGATGGGATTTCAAATGACAATTTTTTATGCTACACGGATTCAAGATGTCATGACATACCAAAATANTGGAATTGGACCTTAATACACGGATCTTTATATTTATATTATTTTCATTTTAAATAATTATTAATTAACGTGAGACTTTATTACTTGAATTTGTGACAAGAAAGACAAAAGAAAAAGAACCAAAAGATAAAACAAGTAATGTGATCAGTGATACGATGATTAAAGAACAAACAGTGAAAAATAAATAGAAGGTGAAAAAGTGTCTCGAGAGGGAAAAAAATTGTGAGAATATAAAACTCCTATTTAAATGGTGAAAAATTGTCTCTAAAACCTGTCTTGTTAGTAATTTGGGTAGGTTAAATCCAACTTTTGTTACAATAGTGTGGGTGTTTTAGACTTATAATAACATGTCTAGTTTCTTTTAAAAAGACGGCAAGCGTAATTTGGGCAAAAGTTAGGTAATTTGGAGACCTTGATAATAAAAAACCAAGTATGTTATCGTTATCACCACACAGAAGATGAATCCCCTCCACACCCACTTACATCATGTCAAAGTTGGGTGAGAATGGCCTTTTGGCTCTACAAAACTTACAAGTTGCGTTTAGTCCTTGTCTAATGATTCGGGAGCAAGAATACAAAACTCAAGAGTCGTGACGTACTGGGAACCCCATGATACACACCTTGCCAAAATGATCAAAAAGAGTTGTCTAGGTCAATTTGGGAAGTAACCTTTTGACATGAAGACGGAAGAGTCATATTCATAATTCACCCCAAAGGGCCGTTAACTTTATGTCGCACCAACTCTTTTTAATTAGATTATTACTCTACCACTTTATGAACTTTTCCCCCCACTATGTACATCAACCATATGAAATTAAAATCCCAAGTTATCTTCCNTTATAACTAATTATTCATATTAAAATCTTAAAAGGGCATTTTTTTTTATTTGGGTTCTTGAAATTTGTTTCCGTAGAATCTTATTCCCAATTAACCGTTGAAAATTATTGTTACCATTCAGATGTTGGACATAGTGGGAAATACTGACACCAAATCAGTAGTCATCACCGGCCATTCCATTGGAGGAGCCATTGCCTCTCTTTGTACCCTCTGGCTTCTGTCTTACCTCCAATCCATCTCTTCCTCCCTGCCACTCNTGTGCATCACTTTTGGCTCACCATTGCTTGGGAATGAATCCTTTTCCCAAGCCATTTCCAAAGAAAGATGGGGTGGCAAATTCTGCCACGTGGTATCAAAGCATGACATAATGCCAAGGTTGCTCTTTGCACCAATAACACCTCTCACTGCTCAGCTAAATTTCCTGCTCCAGTTTTGGCACTTGTCAATGACTTCACCAGAATTTGGGAAGCTTGCGGTTCAAATATCTGACAAAGAGAAAGCNGAGTTATTCACTGCTGTGATGGATTACTTGGAAGCAGCAACACAAAATGGGGAATCTTCAGTGCCAATTTTATTCCACCCTTTTGGGAACTACTTTTTTGTCTCNGAAGAAGGTGCTTTGTGTGTGGATAGTCCAGCCACAATCATCAAGATGATGCATTTGATGCTCTCAACTAGTTCCCCATCTTGTAGTATTGAGGACCATCTCAAGTATGGAGATTATGTTAATAAATTGTCTTTGCAAATGTTGAGTCAAAGAAACTCCATGCAGAACAACATTCCTAATTCAAGCTATGAGGCAGGGCTTGAATTGGCCATTCAGTCTTCCGGTATAGCAAACCAGGTTGTACCATACAGAGCCCAAATAGAATGGTACAAAACTTGGTGCGACGAGCAAGATGACCAAATGGGGTATTATGACTCATTCAAAAGCAGGGGCTCTTCCAAAAGGGACATGAAAGTCAATATCAACCGTCACAAACTAGCCAGGTTTTGGAACAACGTGATTGACATGTTAGAAAGAAATGAGCTACCCCATGATTTTGACAAGCGAGCCAAGTGGGTCAATGCTTCACACTTTTATAAACTGTTGGTTGAGCCACTAGATATTGCTGAATATTATGGGAAAGGGATGCATAGAACCAAGGGTCATTACATACAACATGGTAGAGAGAGAAGGTACGAGATTTTTGATAGGTGGTGGAATACCACTGGTGAAGAAAACAAGGAGAGGAGCAAGTTTGCAAGTTTGACCCAAGATTCATGCTTTTGGGCCAGGGTGGAAGAAGCAAGGGACTGGTTGAATAGTATGAGAAGTGAGAGAGACACTAACAAGTTGGCTCTCTTGTGGGATAAAATTGAGAACTTTGAAAAGTATGCCATTAAACTAATTGAGAACAAGGAGGTGTCAAGTGATGTTCTCGCTAAGAATTCAAGTTACAGTTTATGGGTGGAGGATTTAAAAGAACTGAAACAACTGAAAGCAGAAGTGCAGAGGTTTCCTCCTCAGTTTACACGTTTTCTGGATGGGGAAGTAGTTCCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01287	70069	73547	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001287s00026988.1	PF01764.20	Lipase_3	5	88	2.20E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.920
SRR1783600	control	6.104
SRR1783602	moderate drought stress	6.324
SRR1811619	moderate drought stress	6.365

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.165
DRR006520	Root Summer glycyrrhizin high producing strain	11.111
DRR006521	Root Winter glycyrrhizin high producing strain	1.942
DRR006522	Root Winter glycyrrhizin high producing strain	1.746
DRR006523	Root Summer glycyrrhizin low producing strain	23.169
DRR006524	Root Summer glycyrrhizin low producing strain	22.920
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.487
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.400

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.725
SRR2868004	Drought Stress (root)	48.930
SRR2967015	Control (root)	48.995

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.785
SRR9715740	Leaf	32.106
SRR9715741	Leaf	61.465
SRR9715739	Root	7.007
SRR9715742	Root	19.864
SRR9715743	Root	17.042

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.433
SRR8749028	MeJA induced 9h	29.067
SRR8749029	MeJA induced 9h	28.470
SRR8749030	Uninduced	52.672
SRR8749031	Uninduced	48.343
SRR8749032	Uninduced	31.314

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.521
SRR8400027	Control - Root	20.318