Gene detail

Gene detail information of Glyur001287s00026986

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G63950.1	0	chromatin remodeling 24
NR	XP_003532357.1	0	PREDICTED: DNA excision repair protein ERCC-6-like [Glycine max]
COG	YP_438039.1	1.00E-72	SNF2 family DNA/RNA helicase [Hahella chejuensis KCTC 2396]
Swissprot	tr\|Q8W103\|CHR24_ARATH	0	Protein CHROMATIN REMODELING 24 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|K7L475\|K7L475_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G00400.2}

Sequence

Transcript Sequence

>Glyur001287s00026986.1
CTGAGAACAAATGGAATAATAAGAGCGTCCTCGTCCTCGTCCTCGTCCTCTCCTCTCCTGTGTTGTCGTCTTTGTTGGGGTCAGACTCAGTTGAGTCCCATTTCAATTTCAATTTCAATTTCAATGGCGAACAAAAGCGGAAAGAAACCACTGAGTCTCAACGACAGCCACTATCGCTTCCTTCAAGACCTCTCCGCTCCTCCCAAACCTTCTTCCAAACCCGCCGATCAACACGATTCCCCCATTCAACGCCCAACCACCCAACCACAAGACGAAACTATTCCCCAATTTTCTGCAATCACCGACTTCGATTCCCCAATCGGGCAAAACTCAGTGGAGAATCGTGAACCGTTCAAAGTAGAAGAAGCTCCTCCTGAGGAAGTTCCCCAGTTTTCGGATAATCATTCTTCTCCTAAGGAGGAAAAGAAGACGAAGGTGAAGGTGCAAGGGCGACGCCGACTCTGCAAGGTCGCGTATGCAGGCGATGCCAGCAAAAACGCGGCTGTTGANGAGTCCGATTTTGGTGATCTCGTCGATTTTGATTCGCCCATTCCGGCGGCACCGAAAAATGTGATCGAGATTGAGGAGAGTGGGGGTAGGAGTGAAATTAGGGATATTTTGAATGAGTTGAACTCCAAGTTTGAGTTGCTATCGGTTGAGAGGAAGCGGGTGCCGAAGCCTGTTGAGGTTCCGGTCGGAAGGAAAGAGACTTGTGAAGAGGAGGGATTGGAGTTTGGGAGTGCTGGGTCTTCATTTTCCCCACAACAACAGGATCCCTGTGACAGCTCGTCAAGGGATACTAAAAATGATGGTGATTGTGGTGTTGAGTGNGATTCAGATGATTCTGTTCAGGAGTTGGATCATTTTGAGCCTGAGAATGATGGTTCTATAATCTTGAATGGCCCGAAATCTATGTATAAGTTACCGGGTAAAATTGCNAAAATGTTGTATCCTCATCAGCGGGATGGATTGAAGTGGCTGTGGTCGTTGCACTGTCTGGGTAAAGGTGGAATATTGGGAGATGACATGGGTTTGGGGAAAACGATGCAGATGTGTGGCTTTCTAGCTGGACTGTTTCATTCCCGTCTGATTAGAAGGGCAATGGTTGTGGCCCCCAAAACACTGTTGCCCCATTGGATCAAAGAATTATCGGCTGTTGGTCTCTCTGAGAAGACTAGAGAATATTTTGGAACTTCTACAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGTGTTCTTCTCACCACATATGATATTGTCCGCAACAATTCTAAGTCCTTACGAGGGAATAATTATTATGATGATGAGGAAAGTGATGACGGCGCTAGATGGGACTACATGATTCTTGATGAGGGGCACCTTATAAAGAACCCAAGCACCCAGAGAGCTAAAAGTTTACTCGAGATACCATGTGCTCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTTAAGGAATTGTGGGCATTGTTCAATTTTTGCTGCCCTGAGTTGCTTGGTGACAAAAAATGGTTCAAAGACAAATTCGAATCACCTATACTTCGTGGAACTGATAAAAATGCTTCTGACAGAGAGAAGCATGTTGGTTCTTCAGTAGCGAAGAGCGAGGTTTTCAGTCAAGATGCGGATAAAACAACAGCAAAACTTTCTCAGAAACAAGAAATCATCGTGTGGCTTCGATTGACCAGTATTCAGCGGCATCTTTATGAAGCATTTTTGAGGAGTGAGATTGTTCTCTCAGCCTTTGATGGCTCACCACTTGCTGCCCTGACGATTTTGAAGAAAATATGTGATCATCCATTTCTGTTGACAAAGCGAGCGGCTGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGAGGAGGTTAATGTTGCTGAAAAATTGGCGATGCACATAGCAGATGTTGCAGAAACAGATAAGTTTAAAGATGAGCATGATGTGTCCTGCAAAATTTCCTTCATCATGTCATTATTGGATAATTTGATCCCTGAAGGGCATAANGTGCTTATCTTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGTTTAGCATCCAAAGGTTATGACTATTTACGAATTGATGGCACAACAAAAGCCAGTGACAGAATAAAGATTGTTGATGATTTCCAAGAAGGTGTTGCTCCTNTATTTCTCTTGACATCTCAGGTTGGTGGTTTAGGATTGACGCTTACAAGAGCAGATCGTGTCATTGTTGTTGATCCTGCTTGGAACCCAAGTACGGATAATCAAAGTGTTGACCGTGCGTATCGTATTGGTCAAAAGAAAGATGTTCTTGTGTATAGACTGATGACTTGCGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATATAAAGGAGGATTGTTCAAAACAGCTACTGAACATAAAGAACAAACTCGGTACTTCAGCCAGCAGGATCTTAGGGAGCTTTTCAGCCTCCCAAAGGAAGGATTTGATGTATCTGTTACCCAACGGCAATTGGATGAGGAGCATGATTGTCGACATACAGTGGACGACTCTTTCAAAGCACATATAGAGTTCCTGAAAAGTCGAGGCATAGCCGGAGTTAGTCACCACAGTTTATTGTTTTCCAAGACAGAACCAGTTCAAGCTGCTCCTGAGGATGATGAAGTAACAAGGAATCATGGGGTTAAATATGTTGGAACTTCATCATCTTCTTCACATGAGGATATTGCTGATGGAGCTGCGTTTGCGTTTAATCCCAAGGATGTTAATNTAAACAAAAAGGGATCTTCTCCAAGCAGTGATGGTAAATTGACGGAGTCAGAAATCAAGGCTAAAATTAATNGGCTCTCCCAAATGCTCTCAAATACGGTGATGGCTTCTAAATTACCTGACAAGGGGGAGAAACTTCGGAAACGGATCGGTGAGCTGAATTCAGAGCTCGCTAAACTGAAGACGGAACAAGGAAACGTAGTTGATTTGGATGATTTTACCAGTGAATTTCAACGAGTGTTGAATGTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01287	57430	64121	+

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001287s00026986.1	PF00176.18	SNF2_N	278	567	1.80E-55
Glyur001287s00026986.1	PF00271.26	Helicase_C	652	728	8.60E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.057
SRR1783600	control	4.092
SRR1783602	moderate drought stress	4.461
SRR1811619	moderate drought stress	4.554

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.781
DRR006520	Root Summer glycyrrhizin high producing strain	5.529
DRR006521	Root Winter glycyrrhizin high producing strain	7.591
DRR006522	Root Winter glycyrrhizin high producing strain	7.334
DRR006523	Root Summer glycyrrhizin low producing strain	3.636
DRR006524	Root Summer glycyrrhizin low producing strain	3.534
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.290
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.293

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.257
SRR2868004	Drought Stress (root)	8.205
SRR2967015	Control (root)	8.953

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.259
SRR9715740	Leaf	2.406
SRR9715741	Leaf	2.012
SRR9715739	Root	0.924
SRR9715742	Root	5.330
SRR9715743	Root	4.640

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.778
SRR8749028	MeJA induced 9h	18.733
SRR8749029	MeJA induced 9h	12.331
SRR8749030	Uninduced	21.163
SRR8749031	Uninduced	41.931
SRR8749032	Uninduced	43.940

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.517
SRR8400027	Control - Root	14.270