Gene detail

Gene detail information of Glyur001287s00026984

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G13440.1	glucose-inhibited division family A protein
NR	XP_004517119.1	PREDICTED: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-like isoform X2 [Cicer arietinum]
COG	YP_007171155.1	glucose-inhibited division protein A [Dactylococcopsis salina PCC 8305]
trEMBL	tr\|G7LE56\|G7LE56_MEDTR	Glucose-inhibited division family A protein {ECO:0000313\|EMBL:AET04778.1}

Sequence

Transcript Sequence

>Glyur001287s00026984.1
AAAAAAANGGGANAACAAGGAAAAACGACATGGAACACTATCGGATGAGGCAGCTCTGGATGACTATGAAACGGCATTGAAGCCCTTCACTGTTTTCCGCCACTGCANACTCACTGCCTCCAACGACTGGAGAGTAAGAATGGCAACGGCGCCGTTTACTCTTCATCTCTGTCGCTTTGGCCAAAGCTTATGCAAAACGCTCTTTCCTACTTCCTCTCCCACTCTGCTGAACCCTCGTTACGTCACATTCCGACGCAAGTTCTGCCGGAGAATCTCCTTCTCCGGCTCCACTTTCTCCCGGCGATTCTCCGCCGTCGCAGCCGGTTCCCCCTCCCGTGACTTGGATTATGGAATTGGAACAGTAGACGAGAAATATGATGTGATTGTAGTTGGAGGAGGACACGCAGGGTGCGAAGCCGCTATTGCCTCTGCACGTTTGGGGGCTAGAACTCTTCTTCTTACTCTCAATATTGACCGGATTGCGTGGCAGCCTTGCAATCCAGCAGTTGGTGGGCCTGCGAAGTCCCAACTTGTTCATGAAGTGGATGCACTAGGTGGTGAAATAGGGAAGATTGCTGATAGATGTTACTTACAAAAGCGTGTACTCAATATCTCAAGAGGTCCTGCAGTTCGAGCTTTGCGTGCTCAGACTGATAAAAGGGAATATGCCTGGGAAATGAAAAATTACTCCAAACCTTTCTATTCGAGAGGCTATGATATTTTACTGGGGAAGAATGATAATGTGGAAGGTGTTTGTACATTTTTTGGAATGAAATTCTACGCTCCATCTGTTATTCTCACCACAGGAACTTTTATGAGTGGTAAAATTTGGGTTGGTAGAACTTCTATGCCTGCAGGAAGAGCTGGCGAGTCTTCTTCACATGGATTAACTGAGAACTTGCAGCAACTTGGTTTTGAAACTGATCGGTTGAAAACTGGAACTCCAGCCCGAGTGGACATTCGCACTGTAGATTTCTCAGGATTAGAACCTCAGCATGGAGATGAAGAGGTCAGCTGGTTTAGTTTTGATCCTGATGTCCATATTGAAAGAGAACAGATGTGCTGCTACCTAACTCGTACTACAAGTACTACTCACCAGATAATTAGAGAGAACTTACATGAAACTCCCACCTATGGTGGATGGGTTGAAGCCAAAGGACCTAGATACTGCCCTTCCATAGAAGATAAGATTGTCAGATTCCAAGATAAGGAGTCTCATCAAGTATTTCTTGAACCGGAGGGTCGACATGTGCCTGAGCTCTATGTGCAGGGATTCTCAACGGGTTTGCCAGAGAGATTACAGTTACCTTTGCTGAGAACTTTGCCTGGACTTGAGAACTGTTCAATGTTGAGGCCTGCATATGCTGTGGAGTATGATTATTTACCTGCTCATCAATGCACTAGGTCTCTTATGACGAAGAAAATACAAGGATTGTTCTTCTCTGGTCAGATAAATGGAACTACAGGCTATGAAGAAGCTGCAGCACAGGGCATTATTTCTGGAATCAATGCTGCTAGACATGCAGATGGTAAACCACTCATTGTTCTTGAGAGGGAGAGCAGTTACATAGGAACATTAATTGATGATCTAGTTACCAAGGACCTGCGAGAGCCTTACCGCATGTTAACAAGCCGCTCAGAGCATCGGTTACTGTTGAGGTCTGATAATGCTGATAGCCGTCTCACTCCTTTGGGCCGTGAAATTGGGTTGATAGATGATAGACGCTGGAAACTGTACCNGGAGAAGCAGGCTCGGATTTCTGAGGAAAAGAAGCGATTGAAAAGTGTTAGGATTTCAGGAGGGGATTTGTCTGCTGAAGTTACTCATCTGTCTGGTCAGCCNGTGAAGGACTCTTCAACATTGGAAAGTCTTCTTAAGAAACCCCATATACAATATGGAGTTCTTGATAAGCATGGTTTTGGTAACAAAAGCTTATCNAGAATGGATAAAGAATGTATTGAGATCGATATTAAGTATGAAGGTTTCATCTTGCGACAGCAAAGCCAACTTCAACAGATGGTTACTCAACAACATAGACCACTTCCTGAAGACTTGGATTACCATGCAATGACAACTTTGTCTCTTGAAGCTCGTGAAAAACTTTCCAAGGTTAGGCCTCAAACCATTGGTCAGGCAAGCAGAGTAGGAGGGGTGAGCCCTGCTGATATCACTGCTCTACTCATTGTGCTCGAAGCCAACAGGAGGAAAGCTCAAGAAAAGAGGAGATATAAAATGATAAATGCCATTCGAGTTAATACCCAAGATGAGGTGCCTGAAGTTTCTTTGACTGAAACAGCTAGNTCTTGATAAGTTTTCATGGCCATTCTCTCAATTTTGATGTTTTGTTGTGCCTTAATATTTATCTCTGATACAAGGGCTACAAAATTAAAGATGAATAGATTAACAGAAGGAATGGAGAGAGAAAAAGAAACCGCGTGTGGTCTTTACTTTCATTTGACAATTTTATTCGTTGATAAAAAATAAAGATATGTGAGATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01287	47029	53395	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0002098 tRNA wobble uridine modification

GO:0008033 tRNA processing

molecular_function
GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001287s00026984.1	PF01134.17	GIDA	80	465	1.80E-145
Glyur001287s00026984.1	PF13932.1	GIDA_assoc_3	611	682	2.40E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.125
SRR1783600	control	6.998
SRR1783602	moderate drought stress	8.084
SRR1811619	moderate drought stress	8.067

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.561
DRR006520	Root Summer glycyrrhizin high producing strain	8.349
DRR006521	Root Winter glycyrrhizin high producing strain	10.102
DRR006522	Root Winter glycyrrhizin high producing strain	9.714
DRR006523	Root Summer glycyrrhizin low producing strain	8.820
DRR006524	Root Summer glycyrrhizin low producing strain	9.041
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.718
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.214

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.574
SRR2868004	Drought Stress (root)	14.685
SRR2967015	Control (root)	18.033

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.977
SRR9715740	Leaf	32.961
SRR9715741	Leaf	27.815
SRR9715739	Root	2.291
SRR9715742	Root	8.091
SRR9715743	Root	6.300

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.013
SRR8749028	MeJA induced 9h	20.093
SRR8749029	MeJA induced 9h	16.154
SRR8749030	Uninduced	8.675
SRR8749031	Uninduced	5.325
SRR8749032	Uninduced	9.642

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.365
SRR8400027	Control - Root	16.408