Gene detail

Gene detail information of Glyur001287s00026979

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G64030.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_006584650.1	PREDICTED: probable methyltransferase PMT26-like isoform X1 [Glycine max]
Swissprot	tr\|Q8L7V3\|PMTQ_ARATH	Probable methyltransferase PMT26
trEMBL	tr\|I1KNV8\|I1KNV8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G00320.1}

Sequence

Transcript Sequence

>Glyur001287s00026979.1
ATTTATTCCACAATAAATAATAAATAAATAATAAATAATATCGACAAACGCCAACTCTACCCCAGTAAGTAACCCCCTCCCAGATATATATGCCTCTAACTCTTGCCATCGCGCTCCCAATCCAAGCATTTCGCACCCTTCTCTTTCTCATGCGCAACACAATGCAGAGATAACAACAACTCTCTTCGGTCTCAGATCTGCTTCTTTCCAATTAGCCGTAGGTATAAACTATCTGTGAACCGTTGCCCCCTGTGACAACATGGCTCAAGGGAAATATACTAGAATAGACAATAAACAATCTTCAAGNTACTGTTCATCAGTGACTATTGTTGTGTTTGTGGGTCTATGCTTGGTTGGGGTTTGGATGATGACCTCATCCTCTGTAGTGCCTGTGCAAAATGTGGATGTGTCTCAGGAGAATAAAAATGAGGTGAAAGAACAGAGCGAGGTGAAAGAACAGGCGACTGACACCACGAACAGCAGTACTCGGCAGTTTGAAGATAATCGGGGCGATCTGCCTGAGGATGCAACCAAGGGGGATAGTAGTGTCACCTCTGAAGACAATTCTGTCATGCCAGAAAAACAGGAACAGAAATTGGATCAAAAGCCTGAAGAGAAGCCTTCTGAGGATACTAAGTCAGAAAATACTGATTCAAATGAGAGCGAGAAGAAATCTGATTCTGATGAGAGCGAGAAGAAGTCGGATTCTGATGAGAGTGAGAAGAAATCTGATTCTGATGAGAGTGAGAAGAAGTCGGATTCTGATGAGAGTGAGAAGAAATCTGATTCTGATGAGAGTGAGAAGAAGTCTGATTCTGATGATAGTGAGAAGAAGTCTGAATCAAATGATAACAAACAGTCTGATTCAGATGAAAGTGAGAAAAAAACTGATGACTCAAGTGAAACAACAGATAATAGGAAAGAAGAAAAGGTAGATCAAAGTGGTAACCAAGAGTCTGATGAAAGCTCTAACGAGAAGAAAACAGATGACAATACCAACAACCAGACCTCTAATGAGGTATTCCCTTCTGTGGCCCAGTCAGAGCTTCTGAATGAAACTACGACTCAAACTGGTTCTTGGTCAACTCAGGCAGCAGAGTCAAAGAATGAAAAGGAGTCTCAAGATTCCTCCAAGCAATCTACTGGGTTCAATTGGAAACTCTGCAATGTCACTGCTGGCCCTGACTATATTCCATGCCTCGACAACTTGAAGGCGATTAAGAAACTTCCAAGTACTAAACACTANGAACACAGAGAAAGGCAATGTCCTCAAGAACCTCCCACCTGCCTTGTCTCTCTTCCTGAAGGATATAAACGCCCAATTGAGTGGCCCAAAAGCAGAGAGAAGATATGGTATTCCAATGTTCCACACACTAAGCTTGCTGAATTTAAGGGGCACCAAAACTGNGTGAAAGTTACTGGCGAGTACCTTACTTTTCCTGGTGGTGGAACCCAATTCAAACACGGTGCACTTCATTACATTGACACTATACAACAGTCTGTACCTGATATTGCTTGGGGCAAACAATCACGTGTGATATTAGATGTTGGATGTGGTGTTGCCAGCTTTGGTGGCTTTCTCTTTGAAAGAGATGTACTTGCAATGTCATTTGCACCAAAAGATGAACATGAAGCTCAGGTACAATTTGCACTTGAAAGGGGAATTCCTGCTATATCTGCTGTGATGGGCACAAAGAGGCTTCCCTTCCCTGGGAGGGTGTTTGATGTAGTCCATTGTGCACGCTGTAGAGTTCCATGGCACATAGAAGGTGGCAAACTTCTTTTGGAGCTGAATAGAGTATTGCGACCTGGTGGTTTCTTTGTATGGTCTGCTACCCCTATTTATCAGAAGCTTCCTGAAGATGTCGAGATATGGAATGAAATGAAGGCACTAACAAAAGCATTGTGCTGGGAAGTTGTGTCCATTAGCAAGGATAAACTTAATGGAGTTGGTATAGCTGTATACAAGAAGCCAACTTCTAATGAGTGTTATGAGAAACGTTCTAAGAGTCAGCCTCCTATGTGTCCAGACTCTGATGATCCTAATGCAGCATGGAACGTTCCCTTACAATCTTGCATGCACAAAGTGCCAGTGACTTCGACAGAACGTGGGTCACAATGGCCAGAGAAGTGGCCAGCAAGACTGACCAAAATTCCTTACTGGTTATCAAATTCTCAAGTTGGAGTTTATGGAAAGCCTGCACCTGAAGATTTTACTGCTGATTATGAACACTGGAAACGTGTAGTGTCCAAGTCTTATCTAAATGGGATGGGAATTCAATGGTCCAATGTGCGGAATGTCATGGATATGAGATCAGTCTATGGAGGGTTTGCTGCAGCTTTGAAGGATTTGAGTATNTGGGTCATGAATGTGGTTCCGGTAGACTCCCCAGACACACTTCCTATTATTTATGAACGAGGTCTTTTTGGCATATATCATGATTGGTGCGAATCATTCAGCACCTATCCCAGGTCCTATGATCTACTCCATGCAGATCATCTGTTTTCAAAGCTTAAGAAAAGGTGCAAGTTTGAAGCTGTAGTGGCCGAGGTTGATCGGATTCTCAGGCCTGAGGGAAAGCTCATTGTCCGCGACACTGCCGAGATCATTAACGAGTTGGAGAGCTTGGTGAAGTCTATGCAGTGGGAGGTTCGCATGACTTACTCTAAAGATACGGAGGGCTTTTTATGTGTCCAGAANTCCATGTGGCGGCCTAAAGAATTGGAGACAGTCGAGTATGCTATTGCTTAAGCATGAATGAGATGCCAACAAGAGTTAGGTGATTTTTGGGTTTTGGCTGCTCAAAATTCTTGTGTAATAACTGTGCTTCCACCACTATTCGTGTATCTTTAAGTTAGGCATTTGTTTTTTCGTCTTTTTTTTTTCCCTTTGGTAATTAATTTTGATCTCCTCTATTTAGAGGTTTGTGTCTTTTGCTGTAACATGGTGCCATAGTTAAGGAAATCTGATCAACATTCTTGCAATTGTAGAGGCCTCGGGTAATTAAATCAAGTAGTTGAGATTCTGGAAAGTNATAGTGAAACGTCCACCAAAAGTTGGCGCAGTGGTTTTGTAATTGAATATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01287	16059	21433	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001287s00026979.1	PF03141.11	Methyltransf_29	309	806	2.50E-223
Glyur001287s00026979.2	PF03141.11	Methyltransf_29	309	806	2.50E-223

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.342
SRR1783600	control	36.862
SRR1783602	moderate drought stress	17.036
SRR1811619	moderate drought stress	17.017

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.106
DRR006520	Root Summer glycyrrhizin high producing strain	27.560
DRR006521	Root Winter glycyrrhizin high producing strain	8.846
DRR006522	Root Winter glycyrrhizin high producing strain	8.701
DRR006523	Root Summer glycyrrhizin low producing strain	21.467
DRR006524	Root Summer glycyrrhizin low producing strain	21.710
DRR006525	Leaf Summer glycyrrhizin high producing strain	44.759
DRR006526	Leaf Summer glycyrrhizin high producing strain	44.920

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	67.544
SRR2868004	Drought Stress (root)	36.650
SRR2967015	Control (root)	39.087

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	64.241
SRR9715740	Leaf	45.465
SRR9715741	Leaf	45.131
SRR9715739	Root	3.583
SRR9715742	Root	18.329
SRR9715743	Root	16.945

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.626
SRR8749028	MeJA induced 9h	28.868
SRR8749029	MeJA induced 9h	14.403
SRR8749030	Uninduced	6.562
SRR8749031	Uninduced	8.400
SRR8749032	Uninduced	4.619

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.847
SRR8400027	Control - Root	45.276