Gene detail

Gene detail information of Glyur001287s00026977.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55010.2	7.00E-143	phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
NR	XP_004509870.1	0	PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial-like [Cicer arietinum]
COG	YP_413296.1	1.00E-115	phosphoribosylformylglycinamidine cyclo-ligase [Nitrosospira multiformis ATCC 25196]
Swissprot	tr\|P52424\|PUR5_VIGUN	0	Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|B7FJ14\|B7FJ14_MEDTR	0	Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256\|RuleBase:RU004370}

Sequence

Transcript Sequence

>Glyur001287s00026977.1
CGCATGAGCGCATCCATAATCGAATTTTTNCCCGTTCGATAAACGCTACATTTAGGGCGCGCTTTTTCGCGGGTCTCCACTCGCCGCCGCGTCTCCACCACAACACAAACACCACCATCCATTACCGGCGCCGCCTCGTTTTCCTTACTTGTTTCCCCCCTCAACGTTCTCTCTATTCGTCTTTACAGTTATTCGATCAGTCTCCGCAATGACCATAGGAGCTTGCACAGAGCTATCGCACTATCTTGCAGTAGCACCAGTGAGACCTAACTCTGGCAAGTGCAACGGCGCCGCCATAATCAGCCGCAGTTTTCGCCATGCAATCGGCGGTTACAACGGCGTATTATCAATGTCGAGGTCGAAGAGGGAAGAGAACAGAGTTGTTGCCGGAGTTGGGGATCAAGGTCTTACGTATAGGGACGCCGGCGTTGACATCGACGCGGGTTCTGAACTCGTTCGAAGAATAGCGAAGATGGCACCTGGGATTGGAGGCTTCGGTGGTTTATTCCCTCTAGGTGATTCGTACCTTGTTGCCGGTACTGATGGTGTGGGAACGAAGGTGATGCTTGCCTTCGAAACTGGCATTCATGACACTATTGGGATTGATCTGGTTGCGATGAGTGTCAATGATATTGTTACTTCAGGGGCAAAGCCTTTGTTTTTCCTTGATTACTTTGCCACTGGCCACCTTGACGTGGATGTTGCTGAACAGGTTATAAAAGGCATTGTTGATGGTTGTAANCAATCTGATTGCGTTCTTCTAGGAGGAGAGGTATTGAAATATCTTACTGCAGAGATGCCTGGTCTTTATAAAGAAGGTGAATATGATCTTAGTGGCTGTGCAGTTGGCATTGTGAAGAAAGATTCTGTAATCAATGGGAAGAACATTATTGCTGGCGATGTTCTTATTGGTCTACCATCTAGTGGAGTTCACTCTAATGGCTTCTCACTTGTAAGAAGAGTACTTGCTCAAAGTGGTCTTTCATTGAAAGATAAACTTCCTGGTGGTGATGTTACAATTGCAGAAGCTTTGATGTCACCAACTGTTATCTATGTTAAACAGGTGCTCGACATAGTCAGCAAGGGAGGGGTGAAGGGAATTGCCCATGTCACAGGTGGTGGTTTCACAGATAACATACCCCGAGTTTTTCCAGAAGGACTTGGTGCTTTTATATACAAAGACTCATGGGAAGTGCCTACAGTGTTCAAATGGCTTCAGGAGGCTGGGAAGATAGAAGATTCTGAGATGAGACGGACGTTTAATATGGGCATAGGGATGGTCCTGGTAGTTAGTCCAGAGGCAGCTAATAGAATACTTGAGAACAAAGGTGATACAGAGAAAGCCTACCGCATTGGTGAAGTTATAAGCGGCATGGGTGTGACTTATGCTTAATTCAGGTTTAGTTTAATCATGTTGTACCTTTGTAATACTTTCGTGGAAAATTTCAAGTTGAGATTTGGATTGCTGGTTTACTCGGGAGGCNAATAGCTTTCCCTACATAAATGCTATGAAACTTGCAACAGTTTTGAAGATGTGGTTGTAGTTGAGTTGTTGGTGAAAATAGCTATGTTATTTTGATCTTANTCTTAGTGAAAATGATTGAGGTTTAATTATCCATTTTTGTATTTGCTAACCCATTCATGGGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01287	919	3782	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01933	purM	EC:6.3.3.1	Purine metabolism	map00230
			Purine metabolism	map00230

Gene Ontology

biological_process
GO:0006189 'de novo' IMP biosynthetic process

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0003824 catalytic activity

GO:0004641 phosphoribosylformylglycinamidine cyclo-ligase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001287s00026977.1	PF00586.19	AIRS	95	189	6.70E-17
Glyur001287s00026977.1	PF02769.17	AIRS_C	229	388	1.90E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.865
SRR1783600	control	15.616
SRR1783602	moderate drought stress	14.011
SRR1811619	moderate drought stress	14.119

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.446
DRR006520	Root Summer glycyrrhizin high producing strain	24.461
DRR006521	Root Winter glycyrrhizin high producing strain	26.696
DRR006522	Root Winter glycyrrhizin high producing strain	25.030
DRR006523	Root Summer glycyrrhizin low producing strain	25.277
DRR006524	Root Summer glycyrrhizin low producing strain	24.661
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.831
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.728

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.003
SRR2868004	Drought Stress (root)	39.001
SRR2967015	Control (root)	34.048

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.555
SRR9715740	Leaf	23.272
SRR9715741	Leaf	20.753
SRR9715739	Root	32.635
SRR9715742	Root	35.496
SRR9715743	Root	34.940

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	44.156
SRR8749028	MeJA induced 9h	21.653
SRR8749029	MeJA induced 9h	21.678
SRR8749030	Uninduced	13.398
SRR8749031	Uninduced	13.643
SRR8749032	Uninduced	15.044

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.523
SRR8400027	Control - Root	37.583