Gene detail

Gene detail information of Glyur001286s00034167

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10180.1	0	slufate transporter 2;1
NR	XP_007141139.1	0	hypothetical protein PHAVU_008G170700g [Phaseolus vulgaris]
COG	YP_005320855.1	5.00E-70	sulfate transporter [Saprospira grandis str. Lewin]
Swissprot	tr\|P53393\|SUT3_STYHA	0	Low affinity sulfate transporter 3
trEMBL	tr\|V7B8G9\|V7B8G9_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW13133.1}

Sequence

Transcript Sequence

>Glyur001286s00034167.1
CAATGCTGTACGCTAAGTACTACTGAAGAGAGTTCACCCAAACACTTCAATCAACCATGCACTGAAGAGCTTCCATTATGGGAGAGCAACAAGTGGTCCTTCCTCATGAGGAGACTGGTCAAACAGAGAGGTCCCAGTGGGTGCTTGATTCTCCCAACCCACCACCTCTGTGGAAGAAGCTATTGAGTTCAGTGAAGGAGACCATTTTCCCTCANGGGAACAAGTTCTGTTTCTCATCCAAGAAGAAAACTCTCCATGGACATGCTGTCTCATTCTTCAAGAGTCTATTCCCAATCATTAGTTGGTTAAGAGAATACAAAGCCTCCAAGTTTAAAGATGACCTTTTAGCTGGTTTAACTCTTGCCAGCCTGTGCATACCTCAGAGCATTGGATATGCTAATACAAGTATTGTTCCTCCTCTTATTTATGCTCTGATGGGGAGCTCAAGAGAAATTGCAATTGGACCTGTAGCTGTAGTATCGATGTTGTTATCTTCCCTGGTCCAAAAAGTGGAAGATCCTGTTGCTAATCCTCATGCCTATAGAAATCTTGTATTCACTGTGACCCTCTTCACTGGAATTTTTCAAGCTGCATTCGGTATTTTAAGGTTGGGTTTTCTTGTGGATTTTCTTTCACATGCTGCACTGGTTGGATTCATGGCAGGTGCAGCAATCATTATTGGTCTTCAACAGCTCAAGGGGTTGCTGGGGATTAGTCACTTCACTTCCAAAACAGATGTAGCATCAGTATTGGTGTCTGTTTATAAGTCATTACATCATCAAATTACATCTGGAGAAAACTGGTGTCCTCTCAATTTTGTCTTGGGGTGTTCATTCTTGATTTTCCTTCTAGTTACTCGCTTTATTGGAAGAAGAAACAAAAAACTTTTCTGGCTGCCTGCTATTTCTCCTCTTCTATCAGTTATACTATCCACTTTAATTGTGTATTTGTCAAAAGCTGATAAGCAAGGAGTTAATATAATAAAGCATGTCAAAGGAGGCCTGAATCCGAGTTCAGTTAGCCAGCTACAATTCAATGGTCAAAATGTTGGGCAAGCAGCCAAAATTGGATTACTTTGTGCAGTCATTGCTCTCACTGAGGCAATAGCTGTTGGAAGATCTTTTGCTTCCATTAAGGGATACCATATTGATGGGAACAAAGAAATGTTGTCAATGGGAATCATGAACATTGCAGGATCTTTATCTTCATGCTATGTGGCAACTGGGTGTCAAACAGCAGTATCAAATATTGTGATGGCCATTACTGTGGTTTTGTTCGTGCAATTATTTGCAAGGCTCTTGTACTACACACCTATAGCTATCCTTGCTTCTATCATCCTCTCTGCACTTCCTGGATTAATTGACATAAATGAGGCTTGCTACATCTGGAAGGTTGACAAATTAGACTTCCTTGCCTGTATTGGTGCTTTCCTTGGCGTCTTGTTTGCATCTGTAGAGATTGGTCTTCTTGTTGCAGTGGTAATCTCGTTTGCAAAGATACTAATACAATCAATTCGACCTGGAGTGGAAATTCTAGGTAGAGTTCCAAGAACAGAAGCCTTCTGCGATTGGGTCATGGAAGAAGATGACTTTCAAGAAACCACCAAGGGAAGGGTCCGAGGAATAATCCTGGACATGACAAACCTGATGAATGTTGATACTTCTGGAATTCTTGCACTTGAGGAACTGCATAAGAGGTTGCTTTCACGTGGCGTAGAGTTAGCTATGGTAAACCCTAGGTGGCTTGTAATTCACAAGCTTAAGCTTGCACATTTTGTGGACAAAATTGGAAAACAATGGGTTTTTCTCACTGTTGGAGAAGCCGTAGACGCATGTCTCTGTACTACCGCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01286	48297	52870	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008272 sulfate transport

GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0008271 secondary active sulfate transmembrane transporter activity

GO:0015116 sulfate transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001286s00034167.1	PF13792.1	Sulfate_tra_GLY	71	141	2.20E-20
Glyur001286s00034167.1	PF00916.15	Sulfate_transp	173	445	3.60E-86
Glyur001286s00034167.1	PF01740.16	STAS	503	582	7.20E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.161
SRR1783600	control	0.243
SRR1783602	moderate drought stress	1.285
SRR1811619	moderate drought stress	1.371

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.593
DRR006520	Root Summer glycyrrhizin high producing strain	5.434
DRR006521	Root Winter glycyrrhizin high producing strain	0.359
DRR006522	Root Winter glycyrrhizin high producing strain	0.244
DRR006523	Root Summer glycyrrhizin low producing strain	3.676
DRR006524	Root Summer glycyrrhizin low producing strain	3.615
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.400
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.375

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.686
SRR2868004	Drought Stress (root)	6.046
SRR2967015	Control (root)	3.538

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.655
SRR9715740	Leaf	1.307
SRR9715741	Leaf	1.653
SRR9715739	Root	2.069
SRR9715742	Root	10.766
SRR9715743	Root	8.282

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.959
SRR8400027	Control - Root	4.986