Gene detail

Gene detail information of Glyur001282s00029605

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65890.1	3.00E-120	ACT domain repeat 1
NR	XP_003525871.1	0	PREDICTED: uncharacterized protein LOC100783892 isoform X1 [Glycine max]
COG	YP_064665.1	5.00E-07	[protein-PII] uridylyltransferase [Desulfotalea psychrophila LSv54]
Swissprot	tr\|Q9FHP1\|ACR1_ARATH	3.00E-147	ACT domain-containing protein ACR1 {ECO:0000305}
trEMBL	tr\|K7KPI3\|K7KPI3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G22770.2}

Sequence

Transcript Sequence

>Glyur001282s00029605.1
ATGGAGATTATTTACCAGCCTCACGTCGACAGGGAGATTGAATCGCTCATAGAAAGAATCCATCCACCCAGGGTATGTATAGACAACGATTCCTGCAAAGACTGCACAGTGGTGAAGTTAATTTTAACAATTTGTTCATCACAGATTGATAGAACGAACAAGCATGGGATATTATTGGAGATGGTCCAAGCGTTGACAGATCTTGACCTCATCATTTCCAAATCATACATTTCTTCTGACGGTGGATGGTTAATGGATGTGTTCCACGTGAGGGATCAGGATGGGAACAAGCTCACTGACGAAAGCCTCGTGCATCACATTCAGCAGTCACTGTGCGAGACAAGAAGCGGCAAAGAAATTTCAAGTGAGCAACCCGGTTGCAATGGACCACANCAAGAAGTGTCAGTGTCCTTGGTGAACGTAGCCATAGAGGTGACAGGAACGGATCGACCGGGCCTGCTCTCGGAGATATCAGCCGTACTAGTGGGCTTGGGCTTTAACGTCACCTCCGCAACGGCCTGGACCCACAATGACAAAGTGGCCTGCATTATCCATCTGGAGGACGCATCCAAACCCGGGCCCACAAACCACACGGAGCTTCTGGCCCATGTCCAGGATCAGATCCGGAACGTGATGGAGGCAGAGAGGGGGAGCGTGAGGTTGACGAGCCTGGCCGCCGCACGACGCAGCCATACAGAACGGCGGCTCCACCAGATGATGCACGCCGGCGGGGACTACGAGAGTTGCCGTGCCTGCCANGTGGAGAGAATCGGCGAGCACAATAAGGGATGTGACAGGACCCACGTTTCCGTGGGTAGATGCGAGGAGNGGGGTTACTGGGTGGTGAGCGTGAGGAGCAGAGACCGCCCTAAGCTTCTCTTTGATACCGTGTGTGTGCTCATGGACATGCAATATGAGGTGTTTCACGCGGCTGTTACCTCCAACAGCTCCATGGCAGACCAGGAGTACTTCATCAGGAACAAGGGAAGTTCGAATCTGGACAAAGAAAGCGAGAAGCGAAGGCTCACCCTATGTTTGATCGCTGCTATAGAGCGCAGAGTTTCGCATGTATGTCCCATGACTCCCGACATGAAGGGATTAAAGATAGATATTCGCACTCAAAACAGAACAGGGTTACTATCGAAGGTGACACGCATCATTCGTGAGAATGGGCTATCCATAACAAGAGTTGAGATTGGAGTAGAAGGTGAGACAGCAGTAGGATCGTTCTATGTTATAGATTCCTCAGGTCAAGCCGTGAACACAAATATAGCGGAGTTGGTGAGGAGAGAAATTGGTGGGTCAATTGTTGCNGTTCAAAATTCGCCCTACAGGGTCCCTCAATCCTCATCATCCAGTACAACCTTGCATGAAACCGAAANCAGTAGAGAGGTTAGACCAAGATTTTCTCTGGGAAGCATGCTATGGTCTCACCTCGAGCACCTCTCCAACAATTTAGGNCCAATTAGATCCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01282	58927	61728	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016597 amino acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001282s00029605.1	PF01842.20	ACT	51	102	7.50E-06
Glyur001282s00029605.1	PF01842.20	ACT	142	189	2.30E-08
Glyur001282s00029605.1	PF01842.20	ACT	371	430	5.30E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.148
SRR1783600	control	0.160
SRR1783602	moderate drought stress	0.194
SRR1811619	moderate drought stress	0.189

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.072
DRR006521	Root Winter glycyrrhizin high producing strain	0.247
DRR006522	Root Winter glycyrrhizin high producing strain	0.293
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.315
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.415

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.351
SRR2868004	Drought Stress (root)	1.258
SRR2967015	Control (root)	0.385

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.112
SRR9715740	Leaf	1.816
SRR9715741	Leaf	2.526
SRR9715739	Root	0.133
SRR9715742	Root	0.116
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.785
SRR8749028	MeJA induced 9h	1.432
SRR8749029	MeJA induced 9h	1.381
SRR8749030	Uninduced	4.471
SRR8749031	Uninduced	14.516
SRR8749032	Uninduced	8.722

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.972
SRR8400027	Control - Root	0.864