Gene detail information of Glyur001282s00029596 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65840.1 | 8.00E-88 | Thioredoxin superfamily protein |
| NR | XP_003608562.1 | 1.73E-148 | hypothetical protein MTR_4g097500 [Medicago truncatula] |
| COG | YP_008088053.1 | 5.00E-10 | Peroxiredoxin [Chthonomonas calidirosea T49] |
| trEMBL | tr|G7JF90|G7JF90_MEDTR | 6.00E-149 | Thioredoxin-like protein {ECO:0000313|EMBL:AES90759.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01282 | 23599 | 26415 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001282s00029596.1 | PF13911.1 | AhpC-TSA_2 | 175 | 293 | 7.80E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.893 |
| SRR1783600 | control | 19.857 |
| SRR1783602 | moderate drought stress | 21.478 |
| SRR1811619 | moderate drought stress | 21.537 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 33.218 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.676 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.769 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.455 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.272 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.995 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 156.634 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 155.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.746 |
| SRR2868004 | Drought Stress (root) | 9.493 |
| SRR2967015 | Control (root) | 10.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 95.173 |
| SRR9715740 | Leaf | 170.773 |
| SRR9715741 | Leaf | 88.761 |
| SRR9715739 | Root | 5.986 |
| SRR9715742 | Root | 8.642 |
| SRR9715743 | Root | 8.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.201 |
| SRR8749028 | MeJA induced 9h | 7.620 |
| SRR8749029 | MeJA induced 9h | 11.292 |
| SRR8749030 | Uninduced | 8.799 |
| SRR8749031 | Uninduced | 4.490 |
| SRR8749032 | Uninduced | 3.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.258 |
| SRR8400027 | Control - Root | 11.947 |