Gene detail

Gene detail information of Glyur001282s00029593

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37750.1	2.00E-104	Integrase-type DNA-binding superfamily protein
NR	XP_007155799.1	0	hypothetical protein PHAVU_003G232600g [Phaseolus vulgaris]
Swissprot	tr\|Q38914\|ANT_ARATH	2.00E-134	AP2-like ethylene-responsive transcription factor ANT
trEMBL	tr\|V7CEK3\|V7CEK3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW27793.1}

Sequence

Transcript Sequence

>Glyur001282s00029593.1
CTGGTGGACTTTGAAGTTGCATCCACTTCCACTTACTATACAAGAATGAGGCCTCTGCCTTCAATGTTTTTGGGGTGCAGCACACAGGTCTTTTTTTGGATGACAGTAACTAATTTTTTTTTTATGGGGTATTGATTTTAATCCAAGAGTTAAGAACTCTTGCATAAAAGAGAAAAAGGAAAGGAGAGAAAGAAAAGGGGGAAGGAGGGGGAGCGTAGAATAAAGCAAAAGCTAAGGTCTTTCTCATACACGGATCCCCATGGAATTGTGGGAAGGATGCCTAGCATTGCTTGCTGGAACACATTCTTTTTGTTTAGTTTAAAGGAACTTGCTTTGTTCCCCTTTAGAAATGTGTCCTGTGAGAGACACCCTTATATACATACACGCCCGAGACACAGAAAAAACCAAAGAGAGCTTACCTACATAGATAATAGATAGATTTCTTTACATTGATTGTTAGATTTAGCTCAGTCAGTTTCTGCAACCAAGACAAAAAAACATTTAGCAAAAACTAAAGGAGAAAAAAAAAAGAAATTGTTCTAAATGGTGGGGGTGGGAAGGCTAGATATTAGATAGTAGATAATATGGTATGATTAGTATACTTGTTTCCCAATGATTGAGTTGCCTTGCTTCAAGACAAATATCGCTGGGGATTTCTGTTATTATTTGGNGAAGGAGTGAGTAGTTGTGAGAGAAGATGAAGGGAGGCATGGAAAATGATGACACTGTTGACAACGTTAACAATCAAAATAACTGGCTNGGTTTCTCACTCTCTCCTCAAATGAACATAGGGGCCCCTTCACATTCACACCCTCATCAGTCCCAGGCTTCCTCTGCTGCTGCTGAAGTCGTTCCACTTCCAGCAAGCTTTTACCACCCTGCTCCTCTTCATAACTATGGCTTCTCTTATGGACTTGAAGCTGAAAATGGTGGGTTGTATTCAGTACTGCCCATCATGCCCCTCAAATCTGATGGCTCTCTCTATGGAATGGAAGCTCTGAGCAGGTCCCAAGCACAAGCAATGGCTACTACTTCAGCACCAAAACTGGAGAATTTCTTAGGTAGCGAGGCGACGGGGANCCCTCACTATGCATGTAGTAGTGCCACAGAAACAATGCCTCTGAGCTTAGACAGTATGTTTTACCATCACCAACAAAACCAAGTCCAACAACAACATCCGCAAGAACTTCATCATCCCCAACACTTGTCCTATTACTCCTCCACCTTGAGAAACCATGATGTGATGTTACAACAAGGGTCCAAGCAAAGTCAAACTTCAGCTGATAGCAATATTCTCCATGTCACAAANAACATGGCTGCTGAGGATGGACTCAAGTGCTGGGTCCTAAGGAACTTCCCAGCTAGCCATAGCCATGCACAGGAGTCAAAGATGATGGTTCCTGTTGTGGAGGAAAATAATGAAGGTGAATCCGGGTCCAATATTGGATCAGTGGCGCCATATGGGGATTTGCATTCTTTGAGCTTGTCCATGAGTCCTAGCTCACAATCAAGTTGTGTTACAAGTTCACAGCGTACTTCACCTGCTGTCATTGATTGTGTTGCCATGATGGATACTAAGAAAAGGGGACCGGAAAAATTTGAGCAGCAGAAGCAAATTGTTCATAGGAAATCCATTGACACCTTTGGACAAAGAACCTCCCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGGAGATATGAAGCTCATCTATGGGATAACAGCTGCAAGAAAGAGGGCCAAAGCAGGAAAGGAAGACAAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCAAGCCGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAATATGACCAGACAGGAATATGTGGCTCATTTGAGAAGAAAAAGTAGCGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGCAGACACCATCAACATGGAAGGTGGCAAGCTCGAATTGGTAGGGTGGCTGGGAACAAAGATCTATATCTTGGAACCTTCAGTACCCAAGAGGAAGCAGCTGAGGCCTATGACATTGCTGCTATAAAATTCCGAGGAGTCAATGCTGTAACTAACTTTGATATAACAAAATACGATGTTGAAAAAATCATGGCAAGCAGTAACCTTCTTAGCAGTGAACTGGCTAGGAGGAACAACAGAGAGGTAGTTGATGNTGGAACTCAGTATATTGACACTCGAAGTACTCCAGAAGCCATTTTAATGCAACAGAAGAACTGCGAGAACCAATCAGATCAATGGAAGATGGCTCTCTATCAACAATCCTCCCAACAACTTGACCAGAATCCACCAAGAATAGAGACTGACAGCAGAACTCATCAACCCTTCTCAGTGTCTATAGATAACATGTTTCATCAACAAGAAGAGGAACCAAGTAGTAAGATGAGAAGTACCACCCATGTGTCAAATCCTTCTTCATTGGCCACAAGTTTGAGCAGCTCAAGAGAAGGTAGCCCTGATAGGATCACAAGCTTGCCAATGCTCTCTGGAATGCCTTCAACAACAGCGTCCAAACTATTGGCTAATAGTACTCCCAATAGTAACGTGAATTCTTGGGATCCATCACCCCATCTGAGGCCTACCCTTTCTTTGCCTCAGATGCCCCTTTTTGCTGCTTGGACAGATACATAGTCCCCTTTTTTTTTTCCCTCTCTCACTCTCAAGTAAAATTTCAATCTTTTTCATTTTGCATGCAGGAACAATATGAGAGAAGGGGTGGTGGGTCGTAGCTAGTAAAATTGAGGGTTTAATTAATTATCTGCAAGTTTAAACTTTTAAAGTTGTTACATTTTAGCAATTAGCATTTTACTAAAGCAAAGAACTCTTTTTAAGTTTTCATATATATCCTTCTTTAATTATGNCCAGATTTTGTAGATTCAATGATAGAAACGGACGAGAGAAGGCTATAAAGAGGTTATGATTGAGAGAATGAAATGATTAAGGCAATATGGGGGAGACACCATTCATCATTAGTTTCAAACATTGCCGGTCCNCTTAAGTACAGAAACCCAGCTCAGTGTGTGTCCCAATTATGCAGAGCTGGGTCTTTGACCGTAATAATCCACTCTTGTTAACGTCATTGCTACTGATTCTCCACGTCCAGGGTCATCATTGCTTAACAACTTTTTCTTGTTAAACTTTGTCTAAAGGCAGCAGATATTCCCTTACACCTAATTCAAACAAAAATGCAGTGGGGTATGCAAAAATTAGATTCCCTCAGAATGACTTTATGTGATCTGATTGATGACTTAATTACCAGTATCGTATTACAATTTGTCTGCTGCGTTAAGGAAAGCCCTTTGGTTGGAAAAAAGCTCTTGATATCTTTCTTTTCTTTTATTATAAGCACACCCTAATGATGTTGGCTCTTTAAAAAGCAACTTGGACTATGTCGATTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01282	11120	16108	-

Gene family

Gene family	subfamily
Transcription Factors Family	AP2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001282s00029593.1	PF00847.15	AP2	321	377	4.00E-10
Glyur001282s00029593.1	PF00847.15	AP2	422	472	1.50E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.760
SRR1783600	control	7.829
SRR1783602	moderate drought stress	8.898
SRR1811619	moderate drought stress	8.773

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.569
DRR006520	Root Summer glycyrrhizin high producing strain	10.413
DRR006521	Root Winter glycyrrhizin high producing strain	0.928
DRR006522	Root Winter glycyrrhizin high producing strain	0.880
DRR006523	Root Summer glycyrrhizin low producing strain	6.076
DRR006524	Root Summer glycyrrhizin low producing strain	6.057
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.610
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.606

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.346
SRR2868004	Drought Stress (root)	13.455
SRR2967015	Control (root)	19.218

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.068
SRR9715740	Leaf	0.424
SRR9715741	Leaf	0.617
SRR9715739	Root	0.363
SRR9715742	Root	4.821
SRR9715743	Root	3.490

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.020
SRR8749028	MeJA induced 9h	0.128
SRR8749029	MeJA induced 9h	0.557
SRR8749030	Uninduced	0.106
SRR8749031	Uninduced	0.258
SRR8749032	Uninduced	0.404

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.377
SRR8400027	Control - Root	15.654