Gene detail information of Glyur001281s00028025 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02870.1 | 8.00E-54 | |
| NR | AFK48063.1 | 5.42E-84 | unknown [Medicago truncatula] |
| trEMBL | tr|I3T6C1|I3T6C1_MEDTR | 2.00E-84 | Uncharacterized protein {ECO:0000313|EMBL:AFK48063.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01281 | 52995 | 54170 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001281s00028025.1 | PF09420.5 | Nop16 | 5 | 161 | 4.40E-23 |
| Glyur001281s00028025.2 | PF09420.5 | Nop16 | 5 | 136 | 2.70E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 40.274 |
| SRR1783600 | control | 40.655 |
| SRR1783602 | moderate drought stress | 35.483 |
| SRR1811619 | moderate drought stress | 35.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 41.031 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 40.052 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 48.755 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 47.062 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 34.387 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 34.323 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.687 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.578 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 45.883 |
| SRR2868004 | Drought Stress (root) | 32.730 |
| SRR2967015 | Control (root) | 28.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.024 |
| SRR9715740 | Leaf | 28.161 |
| SRR9715741 | Leaf | 23.661 |
| SRR9715739 | Root | 22.201 |
| SRR9715742 | Root | 34.106 |
| SRR9715743 | Root | 30.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 145.610 |
| SRR8749028 | MeJA induced 9h | 53.538 |
| SRR8749029 | MeJA induced 9h | 60.491 |
| SRR8749030 | Uninduced | 16.559 |
| SRR8749031 | Uninduced | 7.617 |
| SRR8749032 | Uninduced | 16.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 41.261 |
| SRR8400027 | Control - Root | 31.698 |