Gene detail information of Glyur001281s00028023 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47710.1 | 2.00E-55 | Adenine nucleotide alpha hydrolases-like superfamily protein |
| NR | XP_003591541.1 | 1.05E-94 | Universal stress protein [Medicago truncatula] |
| COG | YP_007039773.1 | 5.00E-16 | UspA domain protein [Saccharothrix espanaensis DSM 44229] |
| Swissprot | tr|Q8LGG8|USPAL_ARATH | 2.00E-12 | Universal stress protein A-like protein |
| trEMBL | tr|G7IF74|G7IF74_MEDTR | 4.00E-95 | Universal stress family protein {ECO:0000313|EMBL:AES61792.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01281 | 42695 | 45239 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001281s00028023.1 | PF00582.21 | Usp | 10 | 158 | 1.30E-25 |
| Glyur001281s00028023.2 | PF00582.21 | Usp | 45 | 107 | 6.20E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 36.951 |
| SRR1783600 | control | 37.219 |
| SRR1783602 | moderate drought stress | 51.400 |
| SRR1811619 | moderate drought stress | 48.923 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 33.593 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.635 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 393.804 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 380.690 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 248.972 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 245.986 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 88.753 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 87.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 47.987 |
| SRR2868004 | Drought Stress (root) | 83.749 |
| SRR2967015 | Control (root) | 106.492 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 225.615 |
| SRR9715740 | Leaf | 286.154 |
| SRR9715741 | Leaf | 266.557 |
| SRR9715739 | Root | 14.816 |
| SRR9715742 | Root | 48.668 |
| SRR9715743 | Root | 44.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 86.261 |
| SRR8749028 | MeJA induced 9h | 363.511 |
| SRR8749029 | MeJA induced 9h | 282.075 |
| SRR8749030 | Uninduced | 277.091 |
| SRR8749031 | Uninduced | 356.646 |
| SRR8749032 | Uninduced | 419.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 40.928 |
| SRR8400027 | Control - Root | 38.477 |