Gene detail information of Glyur001280s00031947 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45850.2 | 6.00E-61 | AT hook motif DNA-binding family protein |
| NR | XP_003552386.1 | 0 | PREDICTED: uncharacterized protein LOC100802542 isoformX1 [Glycine max] |
| Swissprot | tr|Q9S7C9|ESCA_ARATH | 6.00E-11 | Putative DNA-binding protein ESCAROLA |
| trEMBL | tr|I1N3P0|I1N3P0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G46540.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01280 | 28204 | 33449 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001280s00031947.1 | PF03479.10 | DUF296 | 153 | 268 | 8.10E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.608 |
| SRR1783600 | control | 0.636 |
| SRR1783602 | moderate drought stress | 0.606 |
| SRR1811619 | moderate drought stress | 0.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.957 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.736 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.371 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.170 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.488 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.319 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 40.743 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 39.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.513 |
| SRR2868004 | Drought Stress (root) | 0.891 |
| SRR2967015 | Control (root) | 2.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 47.112 |
| SRR9715740 | Leaf | 64.632 |
| SRR9715741 | Leaf | 50.305 |
| SRR9715739 | Root | 4.202 |
| SRR9715742 | Root | 6.197 |
| SRR9715743 | Root | 6.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.772 |
| SRR8749028 | MeJA induced 9h | 11.449 |
| SRR8749029 | MeJA induced 9h | 8.847 |
| SRR8749030 | Uninduced | 7.797 |
| SRR8749031 | Uninduced | 4.534 |
| SRR8749032 | Uninduced | 4.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.298 |
| SRR8400027 | Control - Root | 7.187 |