Gene detail information of Glyur001280s00031946 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_004500188.1 | 2.25E-79 | PREDICTED: putative ripening-related protein 2-like [Cicer arietinum] |
| Swissprot | tr|Q6H5X0|RIP2_ORYSJ | 1.00E-43 | Putative ripening-related protein 2 (Precursor) |
| trEMBL | tr|G7L3L5|G7L3L5_MEDTR | 7.00E-78 | Ripening related protein family {ECO:0000313|EMBL:AES80135.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01280 | 25253 | 29096 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.259 |
| SRR1783600 | control | 0.279 |
| SRR1783602 | moderate drought stress | 0.168 |
| SRR1811619 | moderate drought stress | 0.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.654 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.212 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.448 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.630 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.692 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.420 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.712 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.263 |
| SRR2868004 | Drought Stress (root) | 0.355 |
| SRR2967015 | Control (root) | 1.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.105 |
| SRR9715740 | Leaf | 8.634 |
| SRR9715741 | Leaf | 8.416 |
| SRR9715739 | Root | 0.492 |
| SRR9715742 | Root | 1.134 |
| SRR9715743 | Root | 2.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.767 |
| SRR8749028 | MeJA induced 9h | 5.458 |
| SRR8749029 | MeJA induced 9h | 5.923 |
| SRR8749030 | Uninduced | 7.624 |
| SRR8749031 | Uninduced | 6.906 |
| SRR8749032 | Uninduced | 5.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.056 |
| SRR8400027 | Control - Root | 1.057 |