Gene detail information of Glyur001280s00031942 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G46210.6 | 1.00E-93 | Ribosomal protein S5 domain 2-like superfamily protein |
| NR | ABD33427.2 | 1.42E-149 | Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3 exoribonuclease [Medicago truncatula] |
| COG | YP_003434757.1 | 7.00E-21 | exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642] |
| Swissprot | tr|Q84T68|EXOS5_ORYSJ | 1.00E-95 | Exosome complex exonuclease RRP46 homolog |
| trEMBL | tr|Q2HRD9|Q2HRD9_MEDTR | 5.00E-150 | Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3 exoribonuclease {ECO:0000313|EMBL:ABD33427.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01280 | 12192 | 15145 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001280s00031942.1 | PF01138.16 | RNase_PH | 13 | 131 | 1.70E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.053 |
| SRR1783600 | control | 7.193 |
| SRR1783602 | moderate drought stress | 6.576 |
| SRR1811619 | moderate drought stress | 7.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.393 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.899 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.064 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.102 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.782 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.156 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.832 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 35.390 |
| SRR2868004 | Drought Stress (root) | 33.796 |
| SRR2967015 | Control (root) | 24.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.523 |
| SRR9715740 | Leaf | 27.483 |
| SRR9715741 | Leaf | 41.532 |
| SRR9715739 | Root | 4.747 |
| SRR9715742 | Root | 16.347 |
| SRR9715743 | Root | 13.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.937 |
| SRR8749028 | MeJA induced 9h | 2.011 |
| SRR8749029 | MeJA induced 9h | 4.188 |
| SRR8749030 | Uninduced | 0.644 |
| SRR8749031 | Uninduced | 0.701 |
| SRR8749032 | Uninduced | 1.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.169 |
| SRR8400027 | Control - Root | 34.906 |