Gene detail information of Glyur001279s00031470 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31240.1 | 1.00E-24 | Bromodomain transcription factor |
| NR | XP_004502051.1 | 2.74E-171 | PREDICTED: uncharacterized protein LOC101507726 [Cicer arietinum] |
| Swissprot | tr|Q9SYZ9|TAF8_ARATH | 4.00E-24 | Transcription initiation factor TFIID subunit 8 |
| trEMBL | tr|G7J7B1|G7J7B1_MEDTR | 1.00E-161 | Uncharacterized protein {ECO:0000313|EMBL:AFK48717.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01279 | 53586 | 54536 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001279s00031470.1 | PF07524.8 | Bromo_TP | 40 | 108 | 4.30E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.299 |
| SRR1783600 | control | 2.118 |
| SRR1783602 | moderate drought stress | 2.268 |
| SRR1811619 | moderate drought stress | 1.999 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.154 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.303 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.827 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.017 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.336 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.931 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.694 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.039 |
| SRR2868004 | Drought Stress (root) | 5.274 |
| SRR2967015 | Control (root) | 6.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.334 |
| SRR9715740 | Leaf | 5.224 |
| SRR9715741 | Leaf | 2.783 |
| SRR9715739 | Root | 0.139 |
| SRR9715742 | Root | 1.480 |
| SRR9715743 | Root | 1.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.379 |
| SRR8749028 | MeJA induced 9h | 8.353 |
| SRR8749029 | MeJA induced 9h | 3.831 |
| SRR8749030 | Uninduced | 5.763 |
| SRR8749031 | Uninduced | 3.440 |
| SRR8749032 | Uninduced | 1.977 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.540 |
| SRR8400027 | Control - Root | 3.951 |