Gene detail

Gene detail information of Glyur001279s00031469

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G12290.1	0	Copper amine oxidase family protein
NR	XP_004502050.1	0	PREDICTED: primary amine oxidase-like [Cicer arietinum]
COG	YP_005086886.1	3.00E-90	tyramine oxidase [Pseudovibrio sp. FO-BEG1]
Swissprot	tr\|Q8H1H9\|AMO_ARATH	0	Primary amine oxidase (Precursor)
trEMBL	tr\|G7J7B0\|G7J7B0_MEDTR	0	Copper amine oxidase, enzyme domain protein {ECO:0000313\|EMBL:AES71670.1}

Sequence

Transcript Sequence

>Glyur001279s00031469.1
TGTGTTGTGACTGCAAATAGTGGAGTTGCGGCATTTTGATTTTTGGTGCGTGAACACGTCATTCATCCAATGTCGTGATTGTCGTCCTGTTGTGCCAATGTTGTAATTTAAACAATTTGTGTCAATGTTAACAAATGTTTTCCAATCCTAACCTCACATTCATATATAGTATCATCAAAGACTCCTTCATACTCATCCCACTTCTTCACTGAATCTTGGACTCTTCTTCAGTGCAATAATAGAGATATATATACATATATAGGCCTCTGGTTACAACTTACAGCCATGTAACTGAAGGGAAGAGATCGATAAGCCAAAGAGGAGAGTTGAGGTGAGGTGAGGGTTTGTTTGGTCAACTACGAATCACTGATTGCAGGATTCACATGACCAAANCCCATATNTATTAGAAGCGCAGCCATATCTTTTGTCTCTTTCTTTGGTCTCTGACAACATAACTTTCATCGTGCATATAATTAAACACCATATAGTATACACATCCCTCTCTAAACACAAACTCACTCACNGAGAAAGGGAGAGAGAGTGATATCCATGGATGCTAGAAACTTGTTGCGCTTCCTGGTTCTTTCATTCGGTATGACACTAGTTTTACTTGTTACCTGGCTTCACCTTCCATCATCACTCTCCAACAAGGAGACNCTAGACTGCAACCTTTACTCTGGATGGTGCACCTCAAAGAACCGCTTCCACTCTTCATCACAGCCTAATCTAATCAACAAACCAACCCTCTCCACGCACCAACAACAACAACCACGACACGAATCCGATGTCCCTCACCACCCTCTAGATCCTTTAACCATCCAAGAGTTCAACAAGGNTCGCACCATCCTCTCCACTCACCCTCTGTTTAAGTCCTCATCAAGCTACACCCTCNACTCCATTGTCCTCGAAGAACCGGACAAAGAACTTGTCCTCAAATGGAAAAAGGGTCATCCACTTCTTCCCAGAAAAGCTTCAGTNGTTGCACTTGTGAAGGGTGTCATTCACACACTCACAGTAGACCTTAGCACAAGCAAGGTAACAAGCCATGAAACAGGATCATTTTCTGGGTACCCCACCATGACCGTGGAGGACATGGTTGGGGTACTCGATGTTCCCTTAAAGAACACCGAATTCAACACCACAATCACTCAAAGAGGTGTCAATTTAGCAGACCTTGCATGCCTGCCANTCTCTTCAGGGTGGTATGGGACACCAGTGGAAGAGAATAGAAGGTTGATTAAGGTTCAGTGTTATTCCAAACAAGGCACTGTGAACTTCTACATGAGACCCATAGAGGGGCTCACTGTGCTGGTTGACATGGATAGGAAAGAGGTGGTAGCAATCTCAGATAATGGCAAGAACATTCCTGTGGCCAATGGCATTGACACTGATTACCGTTACTCCATTCAGAAGCTCAATGGAGAGTTGAGGNTGTTGAATCCAATATCATTGGAACAACCAAAAGGTCCAAGCTTTACAGTTGATGGGCACATTGTGAAATGGGCTAACTGGGAATTCCATCTGAAACCTGACCCCAGAGCTGGGACCATCATATCTCANGCCAAGGTGAGAGATCCAGATACATCAGAGCTGAGGAATGTCATCTACAAAGGGTTNACATCTGAACTATTTGTGCCTTACATGGACCCCACAGATGGGTGGTACTTTAAGACATACATGGATGCTGGTGAGTATGGATTTGGGTTGCAGGCAATGCCTCTAGACCCCTTGAATGATTGCCCAAGGAATGCNTACTACATGGATGGAGTGTTTGCCTCTGCTGATGGAACACCNTATGTCCAACCCAACATGATTTGCATTTTTGAGAGTTATGCTGGTGACATTGCTTGGAGACATGCTGAGTGCCCCATCACTGACCTCAAGATTACAGAAGTGAGGCCAAAGGTGACNCTGGTGGTTAGGATGGCAGCAGCGGTGGCAAACTATGACTATATCATGGATTGGGAATTTCAAACCGATGGACTTATCAGAGCAAAGGTTGGACTAAGTGGTATCTTGATGGTGAAAGGAACAACCTATGAGAATNTGAACCAAGTTCCAGAACAAGAATATCTCTATGGGACCCTTTTGAGCGAAAACATCATTGGTGTAATCCATGACCATTACATCACATATTACCTTGACATGGACATTGATGGTTCTGACAATTCATTTGTCAAGGTAAATATCAAGAAGCAAGAGACCTCTCCAGGAGAATCACCCAGAAAGAGNTACCTGAAAGCCGTGAAAAAAGTNGCTAAGACAGAGAAAGATGCNCAAATAAAGCTTAAACTCTATGACCCATCTGAATTTCATGTGGTGAACCCGTTGANGAAGACAAGGGTGGGGAACCCTGTTGGGGATCGTCCAATCGAGAATAAGGACATTGTGTTGTGGTACACNGTGGGGTTCCATCACATACCATGTCAAGAGGACTACCCTATCATGCCTACTGTATCATCAAGTTTTGATCTGAAGCCTGTCAATTTCTTTGAGAGAAATCCAATCCTAAGAATGCCTCCCAATTTCAAAGATGACTTACCTGTTTGCAAGGCACACGATTCAGCTTGAGAATTGAGATTCCATCTGTTGATTTTAGTCCTTGACTATATGTATGAATGATGCCGGAACTCGTGGCTTTAAATAATTAGTAACGCNGGCAGTGGTCAAACTTTGACTGTCCTGTAAAATTTGTAGAATGTGTCATGTCTCTTAGACTCTTACTCTAAATAAACACTAAACTGTAGAATGTGTCCTCTTAAATTGTTAAGTTTTGGTAAGGCTTCCTATCAACAACAAAAACGTTTCAGTAAGGCTTCCTATTTTTATCATCTAAAATTTAACATAAAAGAAAATATTTAGCAAAGGAATCTAAATTATGAATAGATTTCAATCGCAACTGAAATTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01279	47136	52555	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00276	AOC3, AOC2, tynA	EC:1.4.3.21	Glycine, serine and threonine metabolism	map00260
			Tyrosine metabolism	map00350
			Phenylalanine metabolism	map00360
			beta-Alanine metabolism	map00410
			Isoquinoline alkaloid biosynthesis	map00950
			Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

biological_process

GO:0009308 amine metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0005507 copper ion binding

GO:0008131 primary amine oxidase activity

GO:0048038 quinone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001279s00031469.1	PF02727.11	Cu_amine_oxidN2	83	166	6.70E-27
Glyur001279s00031469.1	PF02728.11	Cu_amine_oxidN3	175	274	1.10E-28
Glyur001279s00031469.1	PF01179.15	Cu_amine_oxid	298	604	3.50E-94
Glyur001279s00031469.1	PF01179.15	Cu_amine_oxid	605	659	4.70E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	45.098
SRR1783600	control	45.093
SRR1783602	moderate drought stress	56.189
SRR1811619	moderate drought stress	56.661

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	50.170
DRR006520	Root Summer glycyrrhizin high producing strain	49.234
DRR006521	Root Winter glycyrrhizin high producing strain	91.485
DRR006522	Root Winter glycyrrhizin high producing strain	88.062
DRR006523	Root Summer glycyrrhizin low producing strain	68.213
DRR006524	Root Summer glycyrrhizin low producing strain	68.419
DRR006525	Leaf Summer glycyrrhizin high producing strain	176.603
DRR006526	Leaf Summer glycyrrhizin high producing strain	175.680

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	108.606
SRR2868004	Drought Stress (root)	133.153
SRR2967015	Control (root)	78.659

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.895
SRR9715740	Leaf	93.495
SRR9715741	Leaf	72.180
SRR9715739	Root	10.024
SRR9715742	Root	24.752
SRR9715743	Root	22.233

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.144
SRR8749028	MeJA induced 9h	18.568
SRR8749029	MeJA induced 9h	7.696
SRR8749030	Uninduced	3.024
SRR8749031	Uninduced	1.316
SRR8749032	Uninduced	1.182

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	68.769
SRR8400027	Control - Root	57.440