Gene detail

Gene detail information of Glyur001279s00031462

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30550.1	3.00E-117	alpha/beta-Hydrolases superfamily protein
NR	XP_008382954.1	6.91E-168	PREDICTED: phospholipase A1-Igamma2, chloroplastic-like [Malus domestica]
COG	YP_008088318.1	3.00E-11	Predicted lipase [Chthonomonas calidirosea T49]
Swissprot	tr\|Q3EBR6\|PLA16_ARATH	2.00E-146	Phospholipase A1-Igamma2, chloroplastic (Precursor)
trEMBL	tr\|A0A061DP20\|A0A061DP20_THECC	3.00E-162	Alpha/beta-Hydrolases superfamily protein {ECO:0000313\|EMBL:EOX94574.1}

Sequence

Transcript Sequence

>Glyur001279s00031462.1
ATGGCCGCTTCCATCTCAACCATGCCCAATATCATTCCCTTGTCAAAATCCCCGCGCGAAGCTAGCATCTTCCCATCACATCACACTAAACTCCCAGTGCCACTATCCATTAGGAAACCAATTACCTTTAAATACAAGGCCAAGGCCTTTTCTGAAGGAGATGATGATATTGAAAAACGACGACAGCATAATCAACCGCTGGCTCTGGATGATATTTGGCGTGAAATCCAGGGCGAAAACGACTGGTTTGGTCTTCTGGACCCAATGGACCCGTTGATGCGATCCGAGCTGANCCGNTACGGGGAGATGGCCCAGGCCTGCTACGACGCCTTCGACTACGACCCATACTCCAAGTACTGCGGCAGTTGCAAGTACCCACGCCACCAATTCTTCGAGTCCATAGACATGGTCCACATCGGGTACACCCTCACGCGCCACCTCTACGCCACCGCTAAGCCCAACCTCCCTCACTTCTTCAAGTTCTCGCGGTGGCCCAAGACGTGGAGCAAGTACGCCAACTGGATCGGTTACGTCGCCGTCTCCGACGACGCCACCAGCAACCGTCTCGGCCGCAGAGACATCACCGTGGCGTGGCGGGGAACAGTGACTAGCCTCGAATGGATCACTGACCTCACGGTTTCCCTCGTACCCGTCTCGTTCCCCGAATACGCCGCCATGGTTGAAACCTGTTACTTGGAGCTCTACACGAACAAGGAAGATCACGCGAGCCGGTTTTGCAAGTACTCTGCGAGGGAGCAAGTACTGGTGGAGGTGAAGCGTTTGGTGGAGAAGTACCGTGGTGAGGATGAGGAATTGAGCATTACCATCACGGGACACAGTTTGGGGAGCGCGTTGGCCATATTGAGCGCCTATGACATTGCGGAAACCGGGTTGAACGTGGTGGTCAACCGGCGCGTGCCGGTTACGGTGTTTTCGTTTGCGGGGTCGAGGGTGGGAAACGCGGGGTTCAAGGACAGGTTGACGAGGCTGGGGGTGAAGGTGTTGAGGGTGGTTAACGTGCACGACGTTGTGCCCAGGATGCCTGGGCTTGTCTTCAATGAAAAAACATCGACCGTGCTGCCGCAGGTTTACTCGCATGTTGGGGTGGAGTTGCGGTTGGACCATAAAGACTCGCCGTTCCTCAAGGCTGATGTCGACCCTGCCTGTGCCCATAACTTGGAGGTTCATTTGCACTTGCTTGACGGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01279	60	1268	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001279s00031462.1	PF01764.20	Lipase_3	196	350	2.10E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.622
SRR1783600	control	9.595
SRR1783602	moderate drought stress	7.925
SRR1811619	moderate drought stress	7.692

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.811
DRR006520	Root Summer glycyrrhizin high producing strain	0.753
DRR006521	Root Winter glycyrrhizin high producing strain	0.736
DRR006522	Root Winter glycyrrhizin high producing strain	0.756
DRR006523	Root Summer glycyrrhizin low producing strain	1.988
DRR006524	Root Summer glycyrrhizin low producing strain	2.130
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.063
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.038

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.896
SRR2868004	Drought Stress (root)	14.193
SRR2967015	Control (root)	13.643

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.110
SRR9715740	Leaf	0.052
SRR9715741	Leaf	0.000
SRR9715739	Root	8.176
SRR9715742	Root	6.708
SRR9715743	Root	7.046

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.868
SRR8749028	MeJA induced 9h	1.377
SRR8749029	MeJA induced 9h	0.461
SRR8749030	Uninduced	0.820
SRR8749031	Uninduced	0.150
SRR8749032	Uninduced	0.368

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.695
SRR8400027	Control - Root	3.954