Gene detail

Gene detail information of Glyur001278s00025625

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G48480.1	0	receptor-like kinase 1
NR	XP_003631134.1	0	Atypical receptor-like kinase MARK [Medicago truncatula]
COG	YP_004163702.1	1.00E-18	hypothetical protein [Cellulophaga algicola DSM 14237]
Swissprot	tr\|Q9LP77\|Y1848_ARATH	0	Probable inactive receptor kinase At1g48480 (Precursor)
trEMBL	tr\|G7LE78\|G7LE78_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AET05610.2}

Sequence

Transcript Sequence

>Glyur001278s00025625.1
ATGCCGCCGCCGCCTCACAGACACAGGCACACTCATGAGTTGCTAATTAGTATGCTTGTTCTAGTAAGTGTTGGAGCAGAAGCAGCAGATCTGGGTGTGGAGCGAGGCGCATTGCTGGCTCTCCGCTCAGCGGTGGGCGGTCGAACCCTCTTCTGGAACGCCACCAAGCAGAGCCCCTGCAACTGGGCCGGCGTTCAATGCGAGGGCGGCCACGTGGTGGAGCTCCACCTCCCCGGCGTCGCCCTCTCCGGCCAGATACCCGCCGGGATATTCGGGAACCTCACACGGCTCCGCACCCTGAGCCTCCGGTTCAACGCGCTGAGGGGCCCACTCCCCTCAGATCTGGCCTCCTGCGTCACCCTCAGGAACCTCTACCTGCAGCGCAACCTCCTCTCCGGCCCCATCCCCCTCTTCCTCTTCCGCCTCCCCGACCTCGTCCGCCTCAACATGGCCTTCAACAACTTCTCCGGCCCCCTCCCCTCCGCCTTCAACTCCCTCCCCAGGCTCAAAACCCTCTTCCTCGAGAACAACCGCCTCTCCGGCCCCATCCCCGACTGGAACCGCCTCACCCTCGACCAGTTCAACGTCTCCAACAACCTCCTCAACGGCTCTGTTCCCCCCACCCTCCGCGCCTTCTCTCGGGACTCCTTCCTCGGCAACTCCCTCTGCGGCCGACCCCTCTCCCTCTGCCCCGGCACCTCCGCCGACGATGCTCCCTTTTCTGCCGGACCGGAAGAAGAAGGCGGCGGCGGCAAGAACAAGAAGCTCTCTGGCGGGGCCATTGCCGGAATCGTGATTGGATCCGTGGCGTGTCTCCTGTTGGTCGCTTTCGTTCTGATCCTGGTGTGCAGGAACAAGAGTGGCAAGAAGGGCAGCGCCGTTGATGCTGCCACCCTGAAGCATCTGGCCGAATCGGAAGTCCCTCCCGAGAAGCCCCTTCCCGACGTGGAGAACGGCAACGGATACTCTGCTGCGGCAGCGGCAACAGTCAGCAAGGCTGAGGCCAATGGCAACGGCAATGGTAATGCTGCCAAGAAGTTGGTGTTTTTTGGGAATTCGGAGAGGGCGTTTGATCTGGAGGATTTGCTGAGGGCTTCGGCGGAGGTGTTGGGAAAGGGAACATTCGGGACGGCGTACAAGGCGGTGTTGGAGTCGGGGCCGGTGGTGGCGGTGAAGAGGTTGAAGGATGTGACCATCTCTGAGAAGGAGTTCAGGGACAAGATTGAGGCGGTGGGGGAAATGGATCACCACAACTTGGTCCCTCTCAGGGCTTACTATTTCAGCAGGGACGAGAAGCTGCTTGTCTATGATTACATGTCCATGGGAAGCCTCTCTGCCCTCCTCCATGGAAACAAAGGAGCGGGTAGGACACCACTGAATTGGGAAACCAGATCGGGCATTGCACTTGGGGCTGCCCGTGGCATAGAGTACCTACACTCACAGGGGCCTAATGTTTCCCATGGCAACATAAAGTCATCCAATATCCTCTTGACCAAGTCCTACGACGCCAGAGTGTCTGATTTTGGGCTTGCACAGCTGGTTGGCCCCTCCTCCACCCCTAACCGTGTTGCTGGCTACCGTGCGCCCGAGGTAACCGATCCTCGCAGGGTGTCTCAGAAGGCAGATGTCTACAGCTTTGGTGTGTTGCTTTTGGAACTCCTGACCGGGAAGGCACCCACCCATGCCCTCCTGAATGAGGAAGGGGTGGACCTCCCCAGGTGGGTTCAGTCCGTGGTCAGAGAAGAGTGGACTTCTGAGGTCTTTGATCTTGAGCTCCTCAGGTATCAGAATGTTGAAGAGGAGATGGTTCAGTTGTTGCAGCTTGCAGTTGATTGTGCAGCACCCTACCCTGATAAGCGCCCTTCAATGTCTGAAGTTGCACAGAGCATACAAGAGTTACGCCGCTCTAGCTTGAAGGAGGACGACCAAGACCAAATCCAACATGACCACATCAATGATACAGAATTATTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01278	75817	78267	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001278s00025625.1	PF08263.7	LRRNT_2	34	67	2.10E-05
Glyur001278s00025625.1	PF00069.20	Pkinase	368	629	4.20E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.967
SRR1783600	control	15.288
SRR1783602	moderate drought stress	12.791
SRR1811619	moderate drought stress	12.396

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.258
DRR006520	Root Summer glycyrrhizin high producing strain	13.261
DRR006521	Root Winter glycyrrhizin high producing strain	0.425
DRR006522	Root Winter glycyrrhizin high producing strain	0.450
DRR006523	Root Summer glycyrrhizin low producing strain	9.693
DRR006524	Root Summer glycyrrhizin low producing strain	9.991
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.951
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.041

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	44.213
SRR2868004	Drought Stress (root)	31.380
SRR2967015	Control (root)	36.993

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.028
SRR9715740	Leaf	1.398
SRR9715741	Leaf	1.475
SRR9715739	Root	20.709
SRR9715742	Root	11.012
SRR9715743	Root	12.935

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.132
SRR8749028	MeJA induced 9h	9.312
SRR8749029	MeJA induced 9h	9.605
SRR8749030	Uninduced	1.872
SRR8749031	Uninduced	0.445
SRR8749032	Uninduced	1.677

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.096
SRR8400027	Control - Root	27.897