Gene detail

Gene detail information of Glyur001278s00025622

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G10170.1	NF-X-like 1
NR	XP_006586341.1	PREDICTED: NF-X1-type zinc finger protein NFXL1-like [Glycine max]
Swissprot	tr\|Q9SY59\|NFXL1_ARATH	NF-X1-type zinc finger protein NFXL1
trEMBL	tr\|K7L548\|K7L548_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G06040.2}

Sequence

Transcript Sequence

>Glyur001278s00025622.1
ATGAGCTTGCAACGGAGCGATCAGTACAGGGTTCCTCGTCAGGAATGGGTTCATAGAGCATCCACCTCCACCTCCACCACCAACGGCAACGGGTCAACTCTAGATGAGAACNGTTGCTCGAGACCAAGAAGGAAGAGTCGCACCGGTGCGGAGGAGAAGAAGGGATCGGGAGGATTGTATTTGCCTCAGCTGGTGCAAGAGATTGAGGAGAGGCTCACGAAAGGCACCGTGGAATGCATGATTTGCTGTGACACGGTGCGGAGGTCTGCCCCCATCTGGTCATGCTCTGCCTGCTACTCCATCTTTCACCTCAATTGTATAAAGAAGTGGGCTCGTGCACCCACTTATTCCCTTCCCCACAACAACAATTGGCGCTGCCCTGGCTGTCAGTCTGTGCANCTCACCTCATCCAACGAGATCAAGTATCTTTGCTTCTGTGGGAAGAGGCCGGACCCACCCTCCGATTTCTATCTCATTCCACATTCCTGTGGAGAATCATGCGGGAAGCCTCTTGGTGGGGACGAGTGCCTTTGCCCCCATGTTTGCGTCTTGCAATGCCATCCGGGTCCGTGTCCTCCTTGCAAGGCATTTGCTCCCCCACGTTTGTGTCCCTGTGGGAAGAAAAATGTTACCACTCGCTGTTCTGACCGCCAATCTCTCCTTACCTGTGGCCACCCATGCGATAAGCTTCTTGAGTGTGGGCGTCATCGGTGTGAGCGGATTTGTCACCTCGGTCCTTGTGATCCTTGCCGTCTTCCAATCAATGCCTCTTGCTTTTGCAGTAAAANAAAGACCGAGGCTATTCTTTGTGGGGACATGGCCGTGAAGGGGGAAATCAAAGCAGAGGCTGGACTTTTTTCTTGTGGCTCCACCTGTGGAAGGAGACNTGGCTGTGGGAATCATATCTGTATGGAGACTTGTCATCCGGGCAACTGCGCAGAGTGTGACTTGTTGCCAACCCGTGTCAAGACATGCTGTTGCGGGAAAAATGGATTGGAGGAGGAAAGGAAGAGTTGTTTAGACCCAATACCTACCTGTTCACAGGTATGTGGCAGGTCCCTTCCTTGTGGGATGCATCGTTGTAAAGAGACATGCCATGTCGGGGATTGTTCTCCTTGTTTGGTTCTAGTCTCCCACAAGTGCTGGTGTGGCTCAACTTCCCGAACCGTGGAGTGCTATAAGACAACAACAAGGAATGAGAGGTTTACTTGTGAAAAGCCTTGTGGGCAGAAAAAGAATTGCGGAAGGCATCGATGTAGTGAACGGTGTTGTCCACTTTCTAATCCAAATAATATTCTAAGTGCGGACTGGGATCCACACTTTTGTTCCATGCCATGCGGGAAGAAGTTACGCTGTGGGCAGCATGCGTGTGAATCCCTGTGTCACATTGGCCATTGTCCGCCNTGTCCTCAAACCATATTCACTGATTTGACATGTGCTTGTGGCAAGACTTCAATTCCTCCTCCATTGCCTTGTGGTACACCGCCGCCCTCGTGTCAGCTTCCATGTTCAATTCCTCAGACTTGTTGCCATCCAGCCTCCCACAGCTGCCATTATGGAGATTGCCCTCCTTGTCCAGTGCCTGCAGCGAAAGAGTGTATTGGTGGGCATGTGGTTCTTAGGAACATACCCTGTGGCTCAAAGGATATTAGATGTAATGAGCTATGTGGGAAGATCAGACAGTGTGGTTTACATGCTTGTGGCAGAACATGTCACCCTCCACCCTGTGATAATCAGTCTGCTGTGCAAGGTATACGAGCTTCTTGTGGGCAAACATGTGGTGCTCCAAGGAGNGACTGTCGGCATACATGTATAGATCCTTGTCACCCTTCATCTCCATGTCCAGATAAAAGATGTGAATTCCTTGTCACAATCACTTGTGTTTGTGGCCGAATAAGAGAAAATGTTCGTTGTGATGCTGGTGGTAGCAGTGCTAGCCATGATGCTGACGCCATTCATGAAGCTTCCATTATCCAAAAGTTGCCAGTACCGCTTCAACCGCTGGATGCAAATGGCANAGAAGTCCCCCTTGGACAACGAAAACTGATGTGTAATGATGAGTGTGCTAAGTTGGAGCGTAAAAGGGTTCTTGCAGATGCTTTTGATATTACCGCTCCAAATCTAGATTCTCTCCNCTTGGCTGAGAATTCTGTTGCCTCTAAATTGCTTGCTGATCTGTTGAGANGTGATACCAAATGGGTTTTATCTGTTGAGGAGAGATGCAAATTTTTAGTACTTGGCAAGAGAAGAGGAACCACCCATGGTCTAAAAGCCCATGTTTTCTGTCCTATGCTAAAGGATAAGAGAGATGCAGTGAGGGTGATTGCTGAGAGATGGAAGCTTGCAGTGAATGCAGCTGGTTGGGAGCCAAAGCAATTTATAGTCGTTCATGTTACNCAAAAATCAAGAGCTCCAACACGTGTGCTAGGGGTCAAGGGTACTACAAGTGCACACGCACCCCTTCCTCCTACATTTGATTCTTTGGTAGACATGGACCCTCAATTTGTTGTCTCTTTTCCAGACTTGCCAAGGGATGCAGATATTAGTGCACTGGTGTTGAGATTTGGTGGTGAGTGTGAACTTGTTTGGTTAGATGACAAAAATGCATTGGCTGTTTTTAATGATCCTACTCGAGCTTCAACTGCAATGAGAAGATTGGATCGTGGAAGTATTTATCAGGGAGCTGTTGTGGCTGTTCCAAGTGTTGGGGCACGTGCAACATCTTCAGCTACCAATGCCTGGGTAGGAGCTGGGACAATGAAAGAAGGAGGAGCACTGGCAACATTAAAGGGTAATACATGGAAAAGGGTTGTCATTCAAGAGCCAGGTTGGAGAGAAGATTCTTGGGGTGATGAGGGGTGGGCTACAGGTTCTGCTAATATCCAACCATCTATNTGGAAGAAAGAAGCCCCAATACCTGCTTCACCAAATCCTTGGAGTGTCTTAGATCAAGATTCTTCAAGATCATTTGTTGCACCTGTTAAAGCTGAGATTTCTAGGAAACACGCTGAAAGTAGTTCGGTCACAATGTTGGAGCCTCTTGGTGGTGGTTCAAATCTAGAACGCTATCATGGAAGAAGCTTTGACNCATTGGAAGTTTCTGATATAGTAGATGATTGGGAGAAGGCTTGTGAATGA

Protein Sequence

>Glyur001278s00025622.1
MSLQRSDQYRVPRQEWVHRASTSTSTTNGNGSTLDENXCSRPRRKSRTGAEEKKGSGGLYLPQLVQEIEERLTKGTVECMICCDTVRRSAPIWSCSACYSIFHLNCIKKWARAPTYSLPHNNNWRCPGCQSVXLTSSNEIKYLCFCGKRPDPPSDFYLIPHSCGESCGKPLGGDECLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKNVTTRCSDRQSLLTCGHPCDKLLECGRHRCERICHLGPCDPCRLPINASCFCSKXKTEAILCGDMAVKGEIKAEAGLFSCGSTCGRRXGCGNHICMETCHPGNCAECDLLPTRVKTCCCGKNGLEEERKSCLDPIPTCSQVCGRSLPCGMHRCKETCHVGDCSPCLVLVSHKCWCGSTSRTVECYKTTTRNERFTCEKPCGQKKNCGRHRCSERCCPLSNPNNILSADWDPHFCSMPCGKKLRCGQHACESLCHIGHCPPCPQTIFTDLTCACGKTSIPPPLPCGTPPPSCQLPCSIPQTCCHPASHSCHYGDCPPCPVPAAKECIGGHVVLRNIPCGSKDIRCNELCGKIRQCGLHACGRTCHPPPCDNQSAVQGIRASCGQTCGAPRXDCRHTCIDPCHPSSPCPDKRCEFLVTITCVCGRIRENVRCDAGGSSASHDADAIHEASIIQKLPVPLQPLDANGXEVPLGQRKLMCNDECAKLERKRVLADAFDITAPNLDSLXLAENSVASKLLADLLRXDTKWVLSVEERCKFLVLGKRRGTTHGLKAHVFCPMLKDKRDAVRVIAERWKLAVNAAGWEPKQFIVVHVTQKSRAPTRVLGVKGTTSAHAPLPPTFDSLVDMDPQFVVSFPDLPRDADISALVLRFGGECELVWLDDKNALAVFNDPTRASTAMRRLDRGSIYQGAVVAVPSVGARATSSATNAWVGAGTMKEGGALATLKGNTWKRVVIQEPGWREDSWGDEGWATGSANIQPSXWKKEAPIPASPNPWSVLDQDSSRSFVAPVKAEISRKHAESSSVTMLEPLGGGSNLERYHGRSFDXLEVSDIVDDWEKACE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01278	63703	66840	-

Gene family

Gene family	subfamily
Transcription Factors Family	NF-X1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0000166 nucleotide binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001278s00025622.1	PF01422.12	zf-NF-X1	233	251	1.60E-06
Glyur001278s00025622.1	PF01422.12	zf-NF-X1	356	373	6.40E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.745
SRR1783600	control	0.649
SRR1783602	moderate drought stress	0.785
SRR1811619	moderate drought stress	0.695

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.306
DRR006520	Root Summer glycyrrhizin high producing strain	1.454
DRR006521	Root Winter glycyrrhizin high producing strain	4.129
DRR006522	Root Winter glycyrrhizin high producing strain	3.907
DRR006523	Root Summer glycyrrhizin low producing strain	1.793
DRR006524	Root Summer glycyrrhizin low producing strain	1.823
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.459
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.437

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.257
SRR2868004	Drought Stress (root)	5.622
SRR2967015	Control (root)	3.623

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.384
SRR9715740	Leaf	0.927
SRR9715741	Leaf	0.581
SRR9715739	Root	1.222
SRR9715742	Root	11.077
SRR9715743	Root	9.184

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.163
SRR8749028	MeJA induced 9h	121.091
SRR8749029	MeJA induced 9h	100.679
SRR8749030	Uninduced	2.788
SRR8749031	Uninduced	69.592
SRR8749032	Uninduced	59.492

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.717
SRR8400027	Control - Root	0.387