Gene detail

Gene detail information of Glyur001278s00025619

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40540.2	1.00E-179	potassium transporter 2
NR	XP_007160558.1	0	hypothetical protein PHAVU_002G331700g [Phaseolus vulgaris]
COG	YP_001101535.1	3.00E-66	Kup family low affinity potassium transporter [Herminiimonas arsenicoxydans]
Swissprot	tr\|Q8H3P9\|HAK7_ORYSJ	0	Potassium transporter 7
trEMBL	tr\|K7L550\|K7L550_SOYBN	0	Potassium transporter {ECO:0000256\|RuleBase:RU321113}

Sequence

Transcript Sequence

>Glyur001278s00025619.1
ATGGCTTCTCCACCGCATCCTATTCCTGGTGACGCAACATTCTTTGATGATGTTAGTAAGAAGAAAACATGGAAGCAGNCGGTTCTGGTGTCATTTCAAATTGTTGGAATAGTGTATGGACAACTGAGCACTGCACCCTTGTATGTGTTTGGGACAATGCCAGTGGAAGATCTTGAATCGGAGGAGGTCGTTTACCAACTCTTCTCCTTCANTTTCTGGACTCTCACTGTGATCTCTTTGCTCAAGTATGCCCTCATAGTGCTCAAAGCCGATGACAAAGGAGAGGGTGGTACATTTGCTTTATACTCACTCTTGTGTAGAAATGCAAAAGTTGGCCTACTCCCGTGTGATAGAACCGCCAATGAGGCCGTCAATGTCATGCTTTACGAGGAGACTACAAGTCCTAATTCTAAGGTGGTCGTCAATAATCCTGATTCAAGAGCACGAAGGGCCATTGAGAAACACAAGATCTGTCACTACTTAATATTGTTCTTAGCCCTCTTTGGCTCCTGTATGACAATTGGGACCGCAGTCCTCACTCCAGCTCTTTCAGACGTACCTGTTCCCTCTGCGTGTGTTATATTGGTTGGCTTGTTCATGCTGCAGCCCTGCGGTACTCGTAAAATTGGGTTCATGTTTGCTCCAATTATTGCTGTTTGGCTTTTGTTTGTTGGTGTGGTGGGAGCGTATAATATTTTCCACTGGGATGTAAAAATTATCTATAAAATATCCCCAGTATACNTGTTCAGATTCATCAGAAACATTGACGTCAGCAGATGGAGGTTGTTAGGTAAGATGCTCTTCTATTTTGCAGGATCAGAGGCAATGTTTGCAGGCCTAGGCCATTTCTCCAAGAAATCAATCAAGATTACATTTATATGCTTGATCTATCCGCTTCTTGTATTATGCTATGCGGGACAGGCTGCATATATCTCCAAAAATTTACGTGCTAAAGATTTTAATCATCTTAGCCAATCTATGCCGCGTCATTGCAAACACATGTTCATAGTATTATCCCTACTTTCTTCGGCTGTAGGAAGCCAAGCAACCATAACAGCAAGTTTCTCCATCATTAACCANTGTCTGGCATTAAATTGTTTTCCCAGAGTAAAAGTTATTCACACATCAAAAACGATACATGGGCAGATTTACATCCCCGATGTCAACTGGTTATTAATGATTTTCAGTCTCACTGTCACAGTTGGTTTTAGAGACATGATGAAGATTGGCAATGCAACNGGTTTGGCTATAATTTGTGGAATGCTTGTGACAACTAGTCTCACGTCACTAATCATTGCTTTGTATTGGGAGAAGAATTTGATTGTATCTGCGTGCTTTCTTATATGTTTTGGCTTTGTTGAGGCTGNATATCTTTCCGCATGTCTGCTGCAATTTCACAAGGGAGCTTGGTATCTAGTTGTCCTTTTGGCAGTGTCCTTGACGATCATGCTTTCATGGCATTATGGAACTATGAAGAAGTATGAGTTTGATTTGGAAAACAAGGTTTCCACTGAATGGTTAATNGATGTTAGTCCAGGCCTTGGAATTTCCAGGGTACCTGGAATTGGCTTCATTTACACTGACATAGTAGCAGGAATCCCAGCTTTCTTTTCACATTTTATTACTAATCTTCCTGCATTTCATCAAGTGTTGATCTTGGTGTCCTTCAAGTCTATGCCAGTGCCTCATGTGCCAGAAAGTGAAAGATATGGATATTGTGATNATATCAGGGATACGGGTGATTTTGAGGAACAGATTATTCGTTCTATAGGGGAATTCATTTCCATTGAACAGAGTGATATTGAGTCCATGGTTTCCCCAGATGAAAGAATGATAGTTGTTGGAAATTCATCACCAGATGGAAATGCTTTAGTTCCTCTGAATGAAATAGACTCATGCACGGGGACAAACCNGGTGAACAATGAAGCTCAGATAATCCCAATAGGCGATAAGTTGGAGAGTAGTAGTNGTTGCAAGCAGAGAAAAAAGGTTCGGTTCATGTTGCCTGCTAATAGTCCCAAAATGCANGCACCTGTCAGGAAGGAGCTCTTAGAACTAATTGATGCCAGGGAGAGTGGCAGTGCCTATTTCTTGGGCCAGTCACATTTAGTTGTGCGTGATGGCTCCNACTTTCTCAAGAGATTCTTAATAATGGTCTATCGTTTCAGTGAAAAAAATTGTAGAGAACCTCCAGTAGCTCTTAAAATTCCTCATGCTGCTCTTGTAGAAGTTGGTATGGCATGTACTATATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01278	56574	61351	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0071805 potassium ion transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015079 potassium ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001278s00025619.1	PF02705.11	K_trans	32	571	1.90E-133

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.685
SRR1783600	control	6.734
SRR1783602	moderate drought stress	1.683
SRR1811619	moderate drought stress	1.689

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.136
DRR006520	Root Summer glycyrrhizin high producing strain	2.250
DRR006521	Root Winter glycyrrhizin high producing strain	0.778
DRR006522	Root Winter glycyrrhizin high producing strain	0.701
DRR006523	Root Summer glycyrrhizin low producing strain	0.306
DRR006524	Root Summer glycyrrhizin low producing strain	0.346
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.834
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.732

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.349
SRR2868004	Drought Stress (root)	0.767
SRR2967015	Control (root)	1.023

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.593
SRR9715740	Leaf	0.944
SRR9715741	Leaf	0.437
SRR9715739	Root	1.658
SRR9715742	Root	2.982
SRR9715743	Root	2.785

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.041
SRR8749028	MeJA induced 9h	0.140
SRR8749029	MeJA induced 9h	0.321
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.144
SRR8749032	Uninduced	0.658

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.100
SRR8400027	Control - Root	14.600