Gene detail

Gene detail information of Glyur001278s00025618

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02850.1	0	STELAR K+ outward rectifier
NR	XP_006580390.1	0	PREDICTED: potassium channel SKOR-like [Glycine max]
COG	YP_724331.1	7.00E-41	cyclic nucleotide-binding protein [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q9M8S6\|SKOR_ARATH	0	Potassium channel SKOR
trEMBL	tr\|K7KRD9\|K7KRD9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G33660.4}

Sequence

Transcript Sequence

>Glyur001278s00025618.1
GCTTCACTGCTTATATATATGTATATAGATATAGAGATAGATGTACTACAATTAGAAATCATTACTAGTATAAGGTAGCTGCCTGCAATTTCCCTAAAAAGGAAAAAAAAAAAAAAGAAGGGTGGCTGCAATTTTAGCGGCTAACTAGACGGGCCATTTCGTTAGTTAGTTTAGTGAAGGCTGGTAATTTTTGCACTGAAAAGCTTCGTTGGTGTTGTGGTGGTGCAGTGCATAGCCTGCCGTAACGTAGAATTTTGAATTGGAGATTGGGAAAACAATAGATGCATGGCGATGGTGGTGGCGCAGAAGGAGCTGGAAGGAGTAGTAGCAGCAGAGGAGACATGGCGTACTGGTGGAAAAGCAGGCTGCAGGGGCGTTGTTACGCTGACTCCGAAGCTCAATCACCGCTGAGGCCCCAATTCCTCATTCATCCTGATAACCGGTTGTACGTTGGGTGGAAGCATTTGATGGTGATATGGGCGGCGTACTCGTCGTTCTTCACCCCCATGGAGTTCGGTTTCTTCAGAGGGTTGCCCCACAAGCACAACCTNTTCCTCCTCGACATCGCCGGCCAGCTTTCCTTCCTCATCGACATTGCGCTGCGCTTCTCCGTAGGGTATCACTCCCCCCACTCCCACCGCGTCGTCTTCCATCGCGGCAGGATCGCCCTCAGGTACCTGAAGTCCCCTCGCTTCACCCTCGACCTCCTCAGCTGCCTCCCCTGGGATTACATCTACAAGGCCACCGGGAGCCGCCATGAGGCGGTGCGCTTCCTTCTTTGGATCAGGCTCTCCCGTGCCCTCCGTGTCACCGACTTCTTCCACCGCCTCGAGTACAACATCCGCGTCAACTACCTCTTCACCAGGATCCTCAAGCTTCTCCTCGTGGAGCTCTACTGCACCCACACCGCCGCCTGCATCTTCTACTACCTCGCCACCACCGTTCCCCNCTCCCAGCAGCCCTACACCTGGATTGGCTCCCTCGGCCCCACCATGGCCGATGACCCCTCCTACTCCCACTTCACCCACATCCCCCTCTGGAAGCGCTACGTCATCTCCCTCTACTTTGCAATTGTTACCATGGCAACTGTTGGCTACGGAGACATTCACGCGGTCAACGTCAGAGAAATGATATTCGTCATGATTTATGTCTCCTTTGACATGATTCTCGGCGCTTACCTCCTCGGCAATATGACCGCATTGATCGTCAAGGGATCCAATACAGAGAGGTTCAGGGATAGAATGTCCGAAATCACGAAATACTTGAACAAAAACAATCTGGACAAAACCATACGCAATGCCATCCAAGACCATTTGCGCTTGCAGTGTGATTGCAGCTACATCCAACCCTCTGTTCTTCACGATATCCCAACCACTATCCGCGCAAAGATTTCAATTACTTTGTATGAGCAGTTCATTCAGAAAGTTCCTCTTTTCAGGGGATGCTCTCAGGGGTTTATCAAGCAGATTGCAATCAAAGTCCATGAAGAGTTATTCCTCCCGGGAGAATTGGTTATGGAGCGAGGAAATATAGCAGATCAACTATACTTTGTATATCATGGTGAGCTGCATGAGATTGCACAGGGAGATGGTGATACAAAAGAGGCAATCACATTGCATACCTATAGTTCCTTCGGAGAGGTTTCTTTTCTTTGCAATGTGGCTCAAACTTCCATGGTTCTAGCTCGCGAGTTTTGCAAGGTTTTGTGGCTTGATAAGAAATCATTTACAGATATACTGAAGATATACTTTTTAGATGGACGTATTATCTTGAACAATCTCCTTGAGGTAAAAGACTATAGTCTAAGGTGTAAGCTTTTGGAATCAGACTTCAATCTGAGTATTGGGAACCAGGAAACAGAGCTGGCTATGAGGATGAACTGTGCTGCCTATGATGGTCACCTTGACGTTTTGAAAGGTTTGATTGAATCAGGGGTAGATCCCAATAAGACTGATTATGATGGAAGATCACCTTTGCATATCTCAGCATCAAAAGGATATGCGGATATTTCTTACTTTCTTGTTGAACAAGGAGTAAATGTTAATATTGCAGATAAATTTGGGACTACTCCCTTGCTTGAAGCCATCAAGAATGGACACGAAGATGTAGCATCATTACTTACTAATGCAGGAGCTACCCTTATTGTTGATGATGTTGGCAATTTTCTCTGCATGACTGTTGCAAAGCAGGAGTTGGACCTTCTAAAAATGGTTTTGGCTTGTGGAATTAATCCAAATGCCAAAAATTACGATCAACGTACACCTCTTCACATAGCTGCCTCTGAAGGTTTGCATACAATAGCTGAATTACTTCTAGAAGCAGGAGCAAGTGTTTTATCTAAGGACAGATGGGGAAATACACCACTTCATGAAGCTCGTACAGGTGGAAATAGAAATATGATCAAAATGCTTGAAGTTGCAAAAGTTTATCAGTTGGCTGAGTTATCCAATAGTATTCAAGAAACTCGAGCATTACAAATGTTGCCATCAACGGATGAAATTCCCAGAAAGAGATGTACTGTATTTCCTTTCCACCCATGGGATCAGAAAGAGGATAGGAGAGAGGGAGTTGTCCTATGGGTTCCACAAAGCATTGAAGAACTTGTAAAGGTGGCAATGAAACATTTGGGAATTTCAAATTCTTCCTATATTTTGTCAGAACAAGGTGGAAAAATTCTTTATGTAGACATGATTAACAATGATGAAAAGCTATTTCTAGTAAGTGAAGGAGAACAACAATAAGGACAAGTAATGGAAACGCAATTACCACTAGTTGGTGATCATAATTTAATCTTTTTTACTATGACTTTGTTTTGTATTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01278	46698	53057	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006811 ion transport

GO:0006813 potassium ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005216 ion channel activity

GO:0005249 voltage-gated potassium channel activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001278s00025618.1	PF00520.26	Ion_trans	93	304	9.80E-16
Glyur001278s00025618.1	PF00027.24	cNMP_binding	405	487	1.40E-09
Glyur001278s00025618.1	PF12796.2	Ank_2	534	620	1.20E-16
Glyur001278s00025618.1	PF12796.2	Ank_2	631	710	2.90E-14
Glyur001278s00025618.1	PF11834.3	DUF3354	743	813	9.50E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.716
SRR1783600	control	5.864
SRR1783602	moderate drought stress	14.803
SRR1811619	moderate drought stress	14.800

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.592
DRR006520	Root Summer glycyrrhizin high producing strain	11.305
DRR006521	Root Winter glycyrrhizin high producing strain	68.628
DRR006522	Root Winter glycyrrhizin high producing strain	67.072
DRR006523	Root Summer glycyrrhizin low producing strain	6.868
DRR006524	Root Summer glycyrrhizin low producing strain	6.926
DRR006525	Leaf Summer glycyrrhizin high producing strain	58.173
DRR006526	Leaf Summer glycyrrhizin high producing strain	57.686

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.490
SRR2868004	Drought Stress (root)	4.115
SRR2967015	Control (root)	4.378

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.597
SRR9715740	Leaf	68.368
SRR9715741	Leaf	32.444
SRR9715739	Root	2.048
SRR9715742	Root	8.821
SRR9715743	Root	7.004

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.107
SRR8749028	MeJA induced 9h	1.843
SRR8749029	MeJA induced 9h	2.091
SRR8749030	Uninduced	2.716
SRR8749031	Uninduced	1.680
SRR8749032	Uninduced	1.671

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.080
SRR8400027	Control - Root	15.819